View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_high_10 (Length: 437)
Name: NF3639_high_10
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 41 - 244
Target Start/End: Complemental strand, 29989555 - 29989355
Alignment:
| Q |
41 |
ccacaaaaatcatccccttcttctctactcgtgtgtctctgttcctcatcttcttctctatcaatcatcgtagatccatcctataaaaaattcatcaatt |
140 |
Q |
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| T |
29989555 |
ccacaaaaatcatccccttcttctctactcgtgt--ctctgttcctcatcttcttctctatcaatcatcgtagatccatcctatacaaaattcatcaatt |
29989458 |
T |
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| Q |
141 |
tgttcattgtattcatcccaaactcagcattcttttttattaaaagatcttagatattcattagaaaacagcacagcccagattattttttgaaagaaca |
240 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| || |
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| T |
29989457 |
tgttcactgtattcatcccaaactcagcattcttttttattaaaagatcttagatattcattagaaaacaacacaacccagattat-ttttgaaagatca |
29989359 |
T |
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| Q |
241 |
caac |
244 |
Q |
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|||| |
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| T |
29989358 |
caac |
29989355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 29989362 - 29989303
Alignment:
| Q |
279 |
atcacaacaacacataacaacaataacacgaaaccaaacccattaaatccatctcttctt |
338 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29989362 |
atcacaacaacacataacaacaataacacggaaccaaacccattaaatccatctcttctt |
29989303 |
T |
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