View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_high_20 (Length: 374)
Name: NF3639_high_20
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 43188082 - 43188280
Alignment:
| Q |
9 |
acatcatcattgttacaactagaaagcatttagtgactcttactgagctacttgtcttatatctcggtgctcaactgctggattttgtgtattttttggt |
108 |
Q |
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| T |
43188082 |
acatcatcgttgttacaactagaaagcatttagtgactcttattgagctacttgtcttatatctcggtgctcaactgctggatttt----------tggt |
43188171 |
T |
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| Q |
109 |
gattctttcatcagttagcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatatagggatctagcttccattccaccactt |
208 |
Q |
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| T |
43188172 |
gattctttcatcagttggcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatatagggatctagcttccattccaccactt |
43188271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 263 - 357
Target Start/End: Original strand, 43188281 - 43188375
Alignment:
| Q |
263 |
caccagcactcctttactgttatagtcggtctttgtgtcacatcacggccaacctttgcgtacatgaacacacaaaacatattggtgtcaattgt |
357 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43188281 |
caccagcactcctttactgtgatagtcggtctttgtgtcacatcacggccaacctttgcgtacatgaacgcacaaaacatattggtgtcaattgt |
43188375 |
T |
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