View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_high_26 (Length: 324)
Name: NF3639_high_26
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 13930362 - 13930070
Alignment:
| Q |
19 |
cattcattgcagattagtaaaagaaaatttcctcgaataaattacaacataatatgtgcttcctacttaaaaaccaaagagaattgctctacggtccatc |
118 |
Q |
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| T |
13930362 |
cattcattgcagattagtaaaagaaaatttcctcgaataaattacaatataatatgtgcttcctacttaaaaaccaaagagaattgctctacggtccatc |
13930263 |
T |
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| Q |
119 |
agttttgctcaaaagtttatccatttatcatagtgtaacttccaattgcaaaaaatatgcttttcttccattttatcatatctctcgattgacttatttc |
218 |
Q |
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| T |
13930262 |
agttttgctcaaaagtttatccatttatcatagtgtaacttccgattgcaaaaaatatgcttttcttccattttatcatatctctcaattgacttatttc |
13930163 |
T |
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| Q |
219 |
aaaatctgcttaatttagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttgtgtggcgccaccgcctccgtctgtttc |
311 |
Q |
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| T |
13930162 |
aaaatctgcttaatttagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttgtgtggcgccgccgcctccgtctgtttc |
13930070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 88 - 311
Target Start/End: Complemental strand, 14044473 - 14044249
Alignment:
| Q |
88 |
aaaaccaaagagaattgctctacggtccatcagttttgctcaaaagtttatccatttatcatagtgtaacttccaattgcaaaaaatatgcttttcttcc |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||||||||||||||||||| |
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| T |
14044473 |
aaaaccaaagagaattgctctacggtccatcagttttgctcaaaagtttatcaatttatgagagtgtaacttccgattgcaaaaaatatgcttttcttcc |
14044374 |
T |
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| Q |
188 |
attttatcatatctctcgattgacttatttcaaaatctgcttaatttagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttg-tg |
286 |
Q |
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| T |
14044373 |
attttatcatatctctcgattgacttatttcaaaatctgcttaatgtagtttgtgacagactgtcttgttatccacatctatgtgacgaactatttgcgg |
14044274 |
T |
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| Q |
287 |
tggcgccaccgcctccgtctgtttc |
311 |
Q |
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||||||| ||||||||||||||| |
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| T |
14044273 |
tggcgccgtagcctccgtctgtttc |
14044249 |
T |
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