View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_high_3 (Length: 648)
Name: NF3639_high_3
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 373 - 639
Target Start/End: Complemental strand, 37498861 - 37498594
Alignment:
| Q |
373 |
tattcattatcacaaaaagttttgggtttacaatattttagaattgtgccaccaacctaagacaatattttattatttgtcttgatatttgaagataaaa |
472 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37498861 |
tattcattatcacaaaaagctttgggtttacaatattttagaattgtgccaccaacctaagacaatattttattatttgtcttgatatttgaagataaaa |
37498762 |
T |
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| Q |
473 |
gtcacatgtcacgtatgagaacaaacactacacggattagccatatcttggtgtcaaacatgtgtcaatgtctaacaccgacgcgataccaacacatatg |
572 |
Q |
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||||||||||||||||||| |||||| |||| || ||||||||| |||| |||||||||||||||| |||| | |||||||||||| ||||||||||||| |
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| T |
37498761 |
gtcacatgtcacgtatgagcacaaacgctactcgaattagccatgtctttgtgtcaaacatgtgtcgatgtttgacaccgacgcgacaccaacacatatg |
37498662 |
T |
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| Q |
573 |
attatactaaattgtgtcatt-ttttcatattattttaaatgttgatatgtcaatgtttgtgtctgtg |
639 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
37498661 |
attatactaaattgtgtcatttttttcatattattttcaatgttgatgtgtcaatgtttgtgtctgtg |
37498594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 52 - 257
Target Start/End: Complemental strand, 37499344 - 37499139
Alignment:
| Q |
52 |
aagattaagatgttgtcagcaacttaaattcatatggtaatattccttgctnnnnnnnn-ttatgcatatatctcttgaaattcatacaacatgaagcac |
150 |
Q |
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| T |
37499344 |
aagattaagatgttgtc-gcaacttaaatccatttggtaatattccttgctaaaaaaaagttatgtatatatctcttgaaattcatacaacatgaagcac |
37499246 |
T |
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| Q |
151 |
ataacataaataaatgaaagtaactaaacttaaataaacttgtagttaacatagttataacaactattttcatctatatgtaattgctaactacatcaga |
250 |
Q |
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| T |
37499245 |
ataacataaataaatgaaagtaactaaacttaaataaacttgtagttaacatagttataacaactactttcgtctatatgtaattgctaactacatcaga |
37499146 |
T |
|
| Q |
251 |
tatgtct |
257 |
Q |
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||||||| |
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| T |
37499145 |
tatgtct |
37499139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 37499138 - 37499057
Alignment:
| Q |
300 |
tcttctaagtaaagctagttgcacctagtccttatcaacaaacacattttctcaactcaaatccattacactatattcatta |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |
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| T |
37499138 |
tcttctaagtaaagctagttgcacctagtccttatcaacaaacacattttctcaactcaaatccattagattatatttatta |
37499057 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 223 - 464
Target Start/End: Complemental strand, 37497506 - 37497266
Alignment:
| Q |
223 |
tctatatgtaattgctaactacatcagatatgtctattagctaaggctagttaaatatactacctacatcggatatgtcttctaagtaaagctagttgca |
322 |
Q |
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||||| || ||||| |||||||| ||||||||||||||| |||||||||||| || ||||| ||| | | |||||||| | |||||||| || | || |
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| T |
37497506 |
tctatctgcaattgataactacaccagatatgtctattaactaaggctagttgcatctactaactataccatatatgtctgccaagtaaagttaactcca |
37497407 |
T |
|
| Q |
323 |
cctagtccttatcaacaaacacattttctcaactcaaatccattacactatattcattatcacaaaaagttttgggtttac-aatattttag-aattgtg |
420 |
Q |
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|||||||||||||||||| | |||||| ||||||||||||||| | | |||| || ||||| | || || |||||||| |||||||||| ||||||| |
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| T |
37497406 |
cctagtccttatcaacaa--atgttttcttaactcaaatccattagatttgattccttgtcacagagagcttagggtttacaaatattttagcaattgtg |
37497309 |
T |
|
| Q |
421 |
ccaccaacctaagacaatattttattatttgtcttgatatttga |
464 |
Q |
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| T |
37497308 |
ccaccaacctaa-agaatatttttctgtttgttttgatatttga |
37497266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 70 - 184
Target Start/End: Complemental strand, 37497658 - 37497543
Alignment:
| Q |
70 |
gcaacttaaattcatatggtaatattccttgctnnnnnnnnttatgcatatat-ctcttgaaattcatacaacatgaagcacataacataaataaatgaa |
168 |
Q |
| |
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||||||||||| || |||| |||||||||||| |||||||||||| | ||| | |||||||||||||||| |||||||||||||||||| |
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| T |
37497658 |
gcaacttaaatcaatttggttatattccttgctagaaaaagttatgcatatatacacttcagattcatacaacatgaattggataacataaataaatgaa |
37497559 |
T |
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| Q |
169 |
agtaactaaacttaaa |
184 |
Q |
| |
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| T |
37497558 |
aataactaaacttaaa |
37497543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 37500329 - 37500295
Alignment:
| Q |
18 |
ctaactaatgtctatgtccagtcctaatcaactaa |
52 |
Q |
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| T |
37500329 |
ctaactaatgtctatgtccaatcctaatcaactaa |
37500295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 569 - 608
Target Start/End: Complemental strand, 13427622 - 13427583
Alignment:
| Q |
569 |
tatgattatactaaattgtgtcattttttcatattatttt |
608 |
Q |
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| T |
13427622 |
tatgattatactaaattatgtcattttttcaaattatttt |
13427583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 595
Target Start/End: Complemental strand, 8160484 - 8160436
Alignment:
| Q |
547 |
acaccgacgcgataccaacacatatgattatactaaattgtgtcatttt |
595 |
Q |
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| T |
8160484 |
acaccgacacgataccaacacatataattacactaaattatgtaatttt |
8160436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 541 - 595
Target Start/End: Complemental strand, 43368153 - 43368099
Alignment:
| Q |
541 |
tgtctaacaccgacgcgataccaacacatatgattatactaaattgtgtcatttt |
595 |
Q |
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| T |
43368153 |
tgtctgacaccgacacgacaccaacacatatgatcatattaaactgtgtcatttt |
43368099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 597
Target Start/End: Original strand, 2648537 - 2648582
Alignment:
| Q |
552 |
gacgcgataccaacacatatgattatactaaattgtgtcatttttt |
597 |
Q |
| |
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||||||| ||||||||||||||||| | |||||| ||||||||||| |
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| T |
2648537 |
gacgcgacaccaacacatatgattacattaaattttgtcatttttt |
2648582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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