View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_high_33 (Length: 271)
Name: NF3639_high_33
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 53258829 - 53258578
Alignment:
| Q |
7 |
agcagagaataaagggaatgacaaaaagtaatcacccttgtaatggttgataaatattgcttcatgaaaggcataaaactaatgtagttttagttttcaa |
106 |
Q |
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| T |
53258829 |
agcagacaataaagggaatgacaaaaagtaatcacccttgcaatggttgataaatattgcttcatgaaaggcataaaactaatgtagttttagttttcaa |
53258730 |
T |
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| Q |
107 |
actgagtacgaaaagcaagaggcataaaactaatgtagagttatttttcaaactgaggatgaaaagcaagaacatggagtgaggtgcacattattttgtg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53258729 |
actgagtacgaaaagcaagaggcataaaactaatgtagagttatttttcaaactgaggatgaaaagcaagaacatggagtgaggtgcacattattttgtg |
53258630 |
T |
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| Q |
207 |
atgcattcaaagaaaatacctctctctaaaggtatcatttcaaagaaaatac |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53258629 |
atgcattcaaagaaaatacctctctctaaaggtatcatttcaaagaaaatac |
53258578 |
T |
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