View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3639_high_34 (Length: 270)
Name: NF3639_high_34
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 47074685 - 47074958
Alignment:
| Q |
9 |
agcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47074685 |
agcagagatcaaatccaaaatataacacaaattcgatttcagggaccaatgaataccttctcttgtccattgcgtgtggatcgcatgacaaaatttgcgc |
47074784 |
T |
|
| Q |
109 |
cttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcat----------- |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47074785 |
cttttctctcttggtatagcttttcaaggtctgctactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatctataaagtat |
47074884 |
T |
|
| Q |
198 |
---ctagaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagt |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47074885 |
gaactagaaagtgtaaagcctaaagaagtttaggctaaacaaaaagctatataatttgacattaccctataagt |
47074958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 47056763 - 47056896
Alignment:
| Q |
55 |
caatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgctactgatttttg |
154 |
Q |
| |
|
||||||| |||||||||||||| |||||| | ||| ||||||||||||| | ||||||||||| | | ||||||||||||||||||||| || ||| || |
|
|
| T |
47056763 |
caatgaacaccttctcttgtcctttgcgtttggatggcatgacaaaattcacaccttttctctcattgcatagcttttcaaggtctgctattgttttctg |
47056862 |
T |
|
| Q |
155 |
cagtttactgttgccaacaaacattgatgtcact |
188 |
Q |
| |
|
|| ||||||| || |||||||| ||||||||||| |
|
|
| T |
47056863 |
cattttactgatggcaacaaactttgatgtcact |
47056896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 43 - 200
Target Start/End: Complemental strand, 18230687 - 18230530
Alignment:
| Q |
43 |
gatttcagggaccaatgaataccttctcttgtccattgcgtgttgatcgcatgacaaaatttgcgccttttctctcttggtatagcttttcaaggtctgc |
142 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
18230687 |
gattgcagggatcaatgaacaccttctcttgtccattgcgtgtggatggcatgacaaaatttgcgccttttttttcttggtatagcttttcaaggtctgc |
18230588 |
T |
|
| Q |
143 |
tactgatttttgcagtttactgttgccaacaaacattgatgtcactattttgcatcta |
200 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||| ||||||||| ||||||||||||| |
|
|
| T |
18230587 |
tactgattttttcagtttactgtcggcaacaaactttgatgtcagtattttgcatcta |
18230530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 18230514 - 18230438
Alignment:
| Q |
198 |
ctagaaagtgtaaagcctaaagaagtttaggctaaac----aaaaagctatataatttgacattaccctataagtac |
270 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||| | ||| | ||||||||||||||||||| |||||||| |
|
|
| T |
18230514 |
ctagaaagtgtaaagcctaaaaatgtttaggctaaacgaaaataaaacaatataatttgacattacccgataagtac |
18230438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University