View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_high_37 (Length: 265)
Name: NF3639_high_37
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 34061269 - 34061041
Alignment:
| Q |
18 |
ttttgaatttgatgttcatcgacatttcatattattccaaattagaacatcaatgcaatctttatcaaaggaaagnnnnnnngaagaagaacatcaatgc |
117 |
Q |
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| T |
34061269 |
ttttgaatttgatgttcaacgacatttcatattattccaaattagaacatcaatgcaatctttatcaaaggaaagaaaaa---aagaagaacatcaatgc |
34061173 |
T |
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| Q |
118 |
aatcaaagcaccaaagacatgtaggtgatcaacatgattaacttatatgcaaggtatgagctgtagattgagcattgtatataattaaggcaatgtttaa |
217 |
Q |
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| T |
34061172 |
aatgaaagcaccaaagacatgtaggtgatcaacatgattaatttatatgcaaagtatgagctgtagattgagcattgtatataattaaggcaatgtttaa |
34061073 |
T |
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| Q |
218 |
ggatttttccgataaaagaatagtgcaaaaaa |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34061072 |
ggatttttccgataaaagaatagtgcaaaaaa |
34061041 |
T |
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