View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_high_40 (Length: 254)
Name: NF3639_high_40
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 54791799 - 54791924
Alignment:
| Q |
1 |
tattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgtacgatcattgaagcagaagagtagnnnnnnncttataggttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
54791799 |
tattgtatgtaaaggctgtgtgcttcatgtttggccatgtatttttttctattcttgtatgatcattgaagcagaagagtagaaaaaaacttataggttt |
54791898 |
T |
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| Q |
101 |
taatgctacaaaaatgtctgtctcac |
126 |
Q |
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| T |
54791899 |
taatgctacaaaaatgtctgtctcac |
54791924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 54777347 - 54777220
Alignment:
| Q |
1 |
tattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgtacgatcattgaagcagaagagtagnnnnnnnctt--ataggt |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||| |
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| T |
54777347 |
tattgtatgtaaaggctgtgtgcttcatgtttggccatgtatgtttttctattcttgtacgatcattgaggcagaagagtagaaaaaaacttgcataggt |
54777248 |
T |
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| Q |
99 |
tttaatgctacaaaaatgtctgtctcac |
126 |
Q |
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| T |
54777247 |
tttaatgctacaaaaatgtctgtctcac |
54777220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 52284457 - 52284538
Alignment:
| Q |
1 |
tattgtatgtaaaggctgtgtgcttcatgtttggccatgtannnnnnnctattcttgtacgatcattgaagcagaagagtag |
82 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||||||||| ||||||| |
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| T |
52284457 |
tattgtatgtaaaggccgtgtgcttcaagtttggccatgtatgtttttatattcttgtacgttcattgaagcagtagagtag |
52284538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 54791949 - 54791988
Alignment:
| Q |
151 |
gagtcaaggagtatgcagcgtaaagcccgtgaggaggtac |
190 |
Q |
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| T |
54791949 |
gagtcaaggagtatgcagcgtaaagcccgtgaggaggtac |
54791988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 186
Target Start/End: Complemental strand, 54777195 - 54777160
Alignment:
| Q |
151 |
gagtcaaggagtatgcagcgtaaagcccgtgaggag |
186 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
54777195 |
gagtcaaggagtatgcagcgtaaagcccgtgaggag |
54777160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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