View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_high_55 (Length: 222)
Name: NF3639_high_55
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_55 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 48753055 - 48753231
Alignment:
| Q |
17 |
acatgtcagataaaatcacaattttgttataaaatcatacgtatataatgagttagaattctaagctctccttctttccttcttt--aacattcagtgtt |
114 |
Q |
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| T |
48753055 |
acatgtcagataaaatcacaattttggtataaaatcat-----------gagttagaattctaagctctcctt---tccttctttttaacattcagtgtt |
48753140 |
T |
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| Q |
115 |
gtgtgtcattgtcagttgccacttctttctgtttcggtcgtgtaacatgtttattctattatttgactggtttgtactttgtgtgacaatc |
205 |
Q |
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| T |
48753141 |
gtgtgtcattgtcagttgccacttctttctgtttcggtcgtgtaacatgtttattctattatttgactggtttgtactttgtgtgacaatc |
48753231 |
T |
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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 52092676 - 52092483
Alignment:
| Q |
17 |
acatgtcagataaaatcacaattttgttataaaatcatacgtatataatgagtt--agaattctaagctctccttctttccttctttaacattcagtgtt |
114 |
Q |
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|||||| ||||||||||||||||||| |||| ||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
52092676 |
acatgtgagataaaatcacaattttggtatagaatcatacgtaaatcatgagttagagaattctaagctc--------tccttctttaacattcagtgtt |
52092585 |
T |
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| Q |
115 |
gtgtgtcattgtcagttgcca--cttctttctgttt--------cggtcgtgtaacatgttt-attctattatttgactggtttgtactttgtgtgacaa |
203 |
Q |
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||||||||||||||||||||| || || ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52092584 |
gtgtgtcattgtcagttgccattatttattatgttttccaatacacttcttgtaacatgtttaattctattatttgactggtttgtactttgtgtgacaa |
52092485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 38462695 - 38462727
Alignment:
| Q |
157 |
taacatgtttattctattatttgactggtttgt |
189 |
Q |
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| T |
38462695 |
taacatgtttattctattatttgactgttttgt |
38462727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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