View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_high_9 (Length: 437)
Name: NF3639_high_9
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Complemental strand, 27447714 - 27447304
Alignment:
| Q |
19 |
gcaggaactattacaggtgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccagagaattcaagaggatccacctctttacaggacaac |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
27447714 |
gcaggaactattacagatgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccaaagaattcaagaggatccacctcttcacaggacaac |
27447615 |
T |
|
| Q |
119 |
ctattcaggccatcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27447614 |
ctattcaggccatcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactct |
27447515 |
T |
|
| Q |
219 |
ttcccaacaccagccaaacaagactgtccttttctctcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27447514 |
ttcccaacaccagccaaacaagactgtccttttctctcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacc |
27447415 |
T |
|
| Q |
319 |
tctctggactcacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27447414 |
tctctggactcacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgta |
27447315 |
T |
|
| Q |
419 |
tgatgatgtcc |
429 |
Q |
| |
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||||||||||| |
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| T |
27447314 |
tgatgatgtcc |
27447304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 255 - 429
Target Start/End: Complemental strand, 27430201 - 27430027
Alignment:
| Q |
255 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
354 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27430201 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
27430102 |
T |
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| Q |
355 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
429 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
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| T |
27430101 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 27430467 - 27430229
Alignment:
| Q |
19 |
gcaggaactattacaggtgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccagagaattcaagaggatccacctctttacaggacaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||| ||||| |
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| T |
27430467 |
gcaggaactattacaggtgcactcacaaacatgatcaaggttgcaaagcaacaaaacaagtgcaacaaattcaagaggatccacctctttacaaaacaac |
27430368 |
T |
|
| Q |
119 |
ctattcaggccatcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactct |
218 |
Q |
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||| | | |||||||||||||||||||||||||| | ||||||||||| | |||| |||| ||| || ||||||||||| ||||| |||||||||||| |
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|
| T |
27430367 |
ctactatgcccatcatacttgtagaatcttgcaaagctctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactct |
27430268 |
T |
|
| Q |
219 |
ttcccaacaccagccaaacaagactgtccttttctctca |
257 |
Q |
| |
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||||||||||||||||||||||| || |||||||||||| |
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|
| T |
27430267 |
ttcccaacaccagccaaacaagattgcccttttctctca |
27430229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 304007 - 304083
Alignment:
| Q |
19 |
gcaggaactattacaggtgcactcacaaaaatgatcaaggttgcaaagcaataaaacaagtccagagaattcaagag |
95 |
Q |
| |
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||||| |||| |||||||| |||||||| | |||||| | |||||||||| ||||| || ||||||||||||||| |
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| T |
304007 |
gcagggactactacaggtgtactcacaagatagatcaaagatgcaaagcaaccaaacaggtgcagagaattcaagag |
304083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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