View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_11 (Length: 434)
Name: NF3639_low_11
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 105 - 425
Target Start/End: Original strand, 16584425 - 16584745
Alignment:
| Q |
105 |
tatattacaatgtgcaagcatggttatttctgaaatattttatgttgtgctttgtgaaaaattttggaattaagtgaaatcgaatataaatttttctttg |
204 |
Q |
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| T |
16584425 |
tatattacaatgtgcaagcatggttatttctgaaatattttatgttgtgctttgtgaaaaaaattggaattaagtgaaatcgaatagaaatttttctttg |
16584524 |
T |
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| Q |
205 |
attaaagatttgaataaactctgatagtcatcaaaattcaaccagagaatgtatatgtcgtttgtagttgtagagaaattttgagtcgttactttttaga |
304 |
Q |
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| T |
16584525 |
attaaagatttgaataaactctgatagtcatcaaaatttaaccagagaatgtatatgtcgtttgtagttgaagagaaattttgagtcgttactttttaga |
16584624 |
T |
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| Q |
305 |
agtactagaatgagannnnnnnnncttcgagaaaagaggttgtcacttgattagaggtttctgagtagcacgataattttaaactgttctataaaggtta |
404 |
Q |
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| T |
16584625 |
agtactagaatgagatttttttttcttcgagaaaagaggttgtcacttgattagaagtttttgagtagcacgataattttaaactgttctataaaggtta |
16584724 |
T |
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| Q |
405 |
gaattgtcaaagaagtataat |
425 |
Q |
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| T |
16584725 |
gaattgtcaaagaagtataat |
16584745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 16584315 - 16584400
Alignment:
| Q |
17 |
gaatttacctcgtcgtggtttgaaggatttttgatgtgaacccagagtgtttatgctgataaaaataataatgattgcagtttatt |
102 |
Q |
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| T |
16584315 |
gaatttacctcgtcgtggtttgaaggatttttgctgtgaacccagagtgtttatgctgataaaaataataatgattgcagtttatt |
16584400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 12112083 - 12112025
Alignment:
| Q |
187 |
aatataaatttttctttgattaaagatttgaataaactctgatagtcatcaaaattcaa |
245 |
Q |
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| T |
12112083 |
aatataaattcatctgtgattacagatttgaatggactcttatagtcatcaaaattcaa |
12112025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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