View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_12 (Length: 432)
Name: NF3639_low_12
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Original strand, 52694124 - 52694532
Alignment:
| Q |
9 |
agaaaatggacccctaggctagtccatatgtcccgatgtcaccacactctagagcaagctggcgttgcaaaactaagttgaacataatttggtgtgaaca |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52694124 |
agaaaatggacccctaggctagtccatatgtcccgatgtcaccacactctagagcaagctggcattgcaaaactaagttgaacataatttggtgtgaaca |
52694223 |
T |
|
| Q |
109 |
atgaattcactaaaccctgtccttaactttatgagagctttttaccctgacccttagatccatatcgacgaacgagcctaacatcaaaaggaaccatata |
208 |
Q |
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| T |
52694224 |
atgaattcaccaaaccttgtcct-aactttatgagagctttttaccctgacccttagatccatatcgacgaaagagcctaacatcaaaaggaaccatata |
52694322 |
T |
|
| Q |
209 |
tgccacctaataccaggctaccagctttgatcagtgtcattccttttcacaaatatcctaacaaaacttgaatcattaccatgtggattgttcatcaaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52694323 |
tgccacctaataccaggctaccagctttgatcagtgtcattccttttcacaaatatccaaacaaaacttgaatcattaccatgtggattgttcatcaaat |
52694422 |
T |
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| Q |
309 |
ttcaacnnnnnnnnnnctttcaagcaatgcaatcttgaatacattgtttgtttctatattttatatctaataattgtttggat---ataataaacctaaa |
405 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52694423 |
ttcaac--ttttttttctttcaagcaatgcaatcttgaataca----ttgtttctatattttatatctaataattgtttggatataataataaacctaaa |
52694516 |
T |
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| Q |
406 |
tttatctgtgaagtat |
421 |
Q |
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|||||||||||||||| |
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| T |
52694517 |
tttatctgtgaagtat |
52694532 |
T |
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