View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3639_low_13 (Length: 418)
Name: NF3639_low_13
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_13 |
 | |
|
| [»] scaffold0521 (2 HSPs) |
| | |
|
| [»] scaffold0187 (2 HSPs) |
| | |
|
| [»] scaffold0091 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 4010084 - 4010491
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010084 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
4010183 |
T |
|
| Q |
101 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010184 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
4010283 |
T |
|
| Q |
201 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010284 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
4010383 |
T |
|
| Q |
301 |
ttaccgagggataatcatatttactctttaaatctatagagtaagtcaaatgcgaaattaaaacattaaattatgtttaaagtatttgttgttattctct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010384 |
ttaccgagggataatcatatttactctttaaatctataaagtaagtcaaatgcgaaattaaaacattaaattatgtttaaagtatttgttgttattctct |
4010483 |
T |
|
| Q |
401 |
ttcctttg |
408 |
Q |
| |
|
||| |||| |
|
|
| T |
4010484 |
ttcttttg |
4010491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 37906513 - 37906275
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
37906513 |
tggtgactataaagtatactgaaattgctgagattttaggagctgtaaaaccatttgagagttggctcttgataacaatcatgaaccattttatgtgttc |
37906414 |
T |
|
| Q |
101 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37906413 |
caatgtggagagcacaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcattaagcttcattcaattgattttatgcccatttg |
37906314 |
T |
|
| Q |
201 |
gtaacctaaacctgtaagccctgattatatcttgctcat |
239 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
37906313 |
gtaacctaaacccgtaagccctgattatatcttgctcat |
37906275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 213 - 357
Target Start/End: Complemental strand, 37906273 - 37906129
Alignment:
| Q |
213 |
tgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttcttaccgagggat |
312 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37906273 |
tgtaagccctgattatatcttggtcatttgaatatatgttcatttgatgattgaatgacagatgcagaaacaagggaagtgtgatttcttaccgagggat |
37906174 |
T |
|
| Q |
313 |
aatcatatttactctttaaatctatagagtaagtcaaatgcgaaa |
357 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
37906173 |
aatcatattcactctttaaatctataaagtaagtcaaatgcgaaa |
37906129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 35345692 - 35346099
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35345692 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaatccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
35345791 |
T |
|
| Q |
101 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35345792 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
35345891 |
T |
|
| Q |
201 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35345892 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
35345991 |
T |
|
| Q |
301 |
ttaccgagggataatcatatttactctttaaatctatagagtaagtcaaatgcgaaattaaaacattaaattatgtttaaagtatttgttgttattctct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35345992 |
ttaccgagggataatcatatttactctttaaatctataaagtaagtcaaatgcgaaattaaaacattaaattatgtttaaagtatttgttgttattctct |
35346091 |
T |
|
| Q |
401 |
ttcctttg |
408 |
Q |
| |
|
||| |||| |
|
|
| T |
35346092 |
ttcttttg |
35346099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 2272753 - 2273160
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272753 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
2272852 |
T |
|
| Q |
101 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272853 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
2272952 |
T |
|
| Q |
201 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2272953 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
2273052 |
T |
|
| Q |
301 |
ttaccgagggataatcatatttactctttaaatctatagagtaagtcaaatgcgaaattaaaacattaaattatgtttaaagtatttgttgttattctct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2273053 |
ttaccgagggataatcatatttactctttaaatctataaagtaagtcaaatgtgaaattaaaacattaaattatgtttaaagtatttgttgttattctct |
2273152 |
T |
|
| Q |
401 |
ttcctttg |
408 |
Q |
| |
|
||| |||| |
|
|
| T |
2273153 |
ttcttttg |
2273160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Complemental strand, 5895460 - 5895391
Alignment:
| Q |
134 |
catggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttggta |
203 |
Q |
| |
|
|||||||||||||||||| ||| | ||||| ||||||||||||||| |||||| ||||| ||||||||| |
|
|
| T |
5895460 |
catggtgagttttgtttaattgacgcttatgtaataagcttcattcatttgattctatgctcatttggta |
5895391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 39344240 - 39344647
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39344240 |
tggtgactataaagtatactcaaattgctaagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
39344339 |
T |
|
| Q |
101 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39344340 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
39344439 |
T |
|
| Q |
201 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39344440 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
39344539 |
T |
|
| Q |
301 |
ttaccgagggataatcatatttactctttaaatctatagagtaagtcaaatgcgaaattaaaacattaaattatgtttaaagtatttgttgttattctct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39344540 |
ttaccgagggataatcatatttactctttaaatctataaagtaagtcaaatgcgaaattaaaacattaaattatgtttaaagtatttgttgttattctct |
39344639 |
T |
|
| Q |
401 |
ttcctttg |
408 |
Q |
| |
|
||| |||| |
|
|
| T |
39344640 |
ttcttttg |
39344647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 28725538 - 28725449
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccatt |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
28725538 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggctcttgataacaatcatgaaccatt |
28725449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0521 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: scaffold0521
Description:
Target: scaffold0521; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 4420 - 4064
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
4420 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgtgagttggttcttgataacaatcatgaaccattttatgttttc |
4321 |
T |
|
| Q |
101 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4320 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
4221 |
T |
|
| Q |
201 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4220 |
gtaacctaaacccgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgattgacagatgcagaaacaggggaagtgtgatttc |
4121 |
T |
|
| Q |
301 |
ttaccgagggataatcatatttactctttaaatctatagagtaagtcaaatgcgaaa |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4120 |
ttaccgagggataatcatatttactctttaaatctatagagtaagtcaaatgcgaaa |
4064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0521; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 4679 - 4603
Alignment:
| Q |
92 |
tatgtgttctaatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaat |
168 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4679 |
tatgttttctaatgtggagagtagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaat |
4603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 18290291 - 18289935
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |
|
|
| T |
18290291 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggatcttgataacaatcatgaaccattttatgtatta |
18290192 |
T |
|
| Q |
101 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18290191 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
18290092 |
T |
|
| Q |
201 |
gtaacctaaacctgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
300 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18290091 |
gtaacctaaaccagtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttc |
18289992 |
T |
|
| Q |
301 |
ttaccgagggataatcatatttactctttaaatctatagagtaagtcaaatgcgaaa |
357 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18289991 |
ttaccgagggataatcatattaactctttaaatctatagagtaagtcaaatgcgaaa |
18289935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 18290542 - 18290474
Alignment:
| Q |
100 |
ctaatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaat |
168 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18290542 |
ctaatgtggagagtagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaat |
18290474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 32564 - 32802
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
32564 |
tggtgactataaagtatactgaaattgctgagattttaggagctgtaaaaccatttgagagttggctcttgataacaatcatgaaccattttatgtgttc |
32663 |
T |
|
| Q |
101 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32664 |
caatgtggagagcacaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcattaagcttcattcaattgattttatgcccatttg |
32763 |
T |
|
| Q |
201 |
gtaacctaaacctgtaagccctgattatatcttgctcat |
239 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32764 |
gtaacctaaacccgtaagccctgattatatcttgctcat |
32802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 213 - 357
Target Start/End: Original strand, 32804 - 32948
Alignment:
| Q |
213 |
tgtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttcttaccgagggat |
312 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32804 |
tgtaagccctgattatatcttggtcatttgaatatatgttcatttgatgattgaatgacagatgcagaaacaagggaagtgtgatttcttaccgagggat |
32903 |
T |
|
| Q |
313 |
aatcatatttactctttaaatctatagagtaagtcaaatgcgaaa |
357 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
32904 |
aatcatattcactctttaaatctataaagtaagtcaaatgcgaaa |
32948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 18202542 - 18202745
Alignment:
| Q |
1 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggttcttgataacaaccatgaaccattttatgtgttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
18202542 |
tggtgactataaagtatactcaaattgctgagattttaggagctgtaaaaccatttgagagttggctcttgataacaatcatgaaccattttatgtgttg |
18202641 |
T |
|
| Q |
101 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttatgcccatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18202642 |
taatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttacgcccatttg |
18202741 |
T |
|
| Q |
201 |
gtaa |
204 |
Q |
| |
|
|||| |
|
|
| T |
18202742 |
gtaa |
18202745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 214 - 357
Target Start/End: Original strand, 18202793 - 18202936
Alignment:
| Q |
214 |
gtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacaggggaagtgtgatttcttaccgagggata |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18202793 |
gtaagccctgattatatcttgctcatttgaatatatgctcatttgatgattgaatgacagatgcagaaacagggaaagtgtgatttcttaccgagggata |
18202892 |
T |
|
| Q |
314 |
atcatatttactctttaaatctatagagtaagtcaaatgcgaaa |
357 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18202893 |
atcatattcactctttaaatctatagagtaagtcaaatgcgaaa |
18202936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 18202743 - 18202788
Alignment:
| Q |
312 |
taatcatatttactctttaaatctatagagtaagtcaaatgcgaaa |
357 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18202743 |
taatcatattcactctttaaatctatagagtaagtcaaatgcgaaa |
18202788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 44446 - 44335
Alignment:
| Q |
92 |
tatgtgttctaatgtggagagcagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttcattcaattgattttat |
191 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44446 |
tatgtgttctaaggtagagagtagaatattgaatagcttcatcatggtgagttttgtttagttgtagtttatgcaataagcttgattcaattgattttat |
44347 |
T |
|
| Q |
192 |
gcccatttggta |
203 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44346 |
gcccatttggta |
44335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 256 - 357
Target Start/End: Complemental strand, 44211 - 44110
Alignment:
| Q |
256 |
ttgatgattgaatgacagatgcagaaacaggggaagtgtgatttcttaccgagggataatcatatttactctttaaatctatagagtaagtcaaatgcga |
355 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44211 |
ttgatgaatgaatgacagatgcagaaacaggggaagtgtgatttcttacggagggataatcatattcactctttaaatctatagagtaagtcaaatgcga |
44112 |
T |
|
| Q |
356 |
aa |
357 |
Q |
| |
|
|| |
|
|
| T |
44111 |
aa |
44110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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