View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_14 (Length: 408)
Name: NF3639_low_14
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Original strand, 34896273 - 34896657
Alignment:
| Q |
11 |
cagagaggatgaatggcaagccacaagagtaaagtagccaaaataaatatgtggagaaggcaagagagcaatacaagaacaggtatggtagcataccagc |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34896273 |
cagacaggatgaatggcaagccacaagagtaaagtagccaaaataaatatgtggagaaggcaagagagcaatacaagaacaggtatggtagcataccagc |
34896372 |
T |
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| Q |
111 |
tgcagtattaagtagagtggatgatcggctgaagaccatattcttataaatgtgatcaaaatcagcgtttcgccgattaacagcttccaaatgtgctgcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34896373 |
tgcagtattaagtagagtggatgatcggctgaagaccatattcttataaatgtgatcaaaatcagcgtttcgccgattaacagcttccaaatgtgctgcc |
34896472 |
T |
|
| Q |
211 |
aagtgacaattcacaaagcacattatcctatcgtagactctgattctcaaacccactcctccctgcatgatcaattttttgcgatgtaagtgttcatttc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34896473 |
aagtgacaattcacaaagcacattatcctatcgtagactctgattctcaaacccactcctccctgcatgatcatttttttgcgatgtaagtgttcatttc |
34896572 |
T |
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| Q |
311 |
agtcgagaggaaaaaagtccatacgttaaacaagtttatcaatgcaatttttgtatctttatctcaacctagagtatgtaaaaat |
395 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34896573 |
agtcaagaggaaaaaagtccatacgttaaacaagtttatcaatgcaatttttgtatctttatctcaacctagagtgtgtaaaaat |
34896657 |
T |
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