View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3639_low_15 (Length: 397)
Name: NF3639_low_15
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 171830 - 171444
Alignment:
| Q |
1 |
cagcttcctctttcaaattcatattgcgcgacgatccatatgcacttggatgcattgactggcccgaatgagagaagatattacgtgatcttaactttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
171830 |
cagcttcctctttcaaattcatatcgcgcgacgatccatatgcacttggatgcattgactggcccgaatgagagaagatattacgtgatcttaactttgc |
171731 |
T |
|
| Q |
101 |
aggttcaagagggaagccataacctccttcctcttcaggattgtacttctcactaatgcattttgaattacactgcccttgtctcttctgcagg-nnnnn |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
171730 |
aggttcaagagggaagccataacctccttcctcttcaggattgtacttctcactaatgcattttgaattacactgcccttgtctcttctgcaggaaaaaa |
171631 |
T |
|
| Q |
200 |
nnnntcacatggaaaatgatgaatcaggcaaatccaaacaattctagcaaagaagtttcattaacactatctttatgatttaaagtacctctattgatga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
171630 |
aaaatcacatggaaaatgatgaatcaggcaaatccaaacaattctagcaaagaagtttcattaacactatctttatgatttaaagtacctctattgatga |
171531 |
T |
|
| Q |
300 |
ctgaatctcaacattagcatcaggtgctggcacaactttagactctttaaaattccatccaactgattcctgtcttacatgtccttt |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
171530 |
ctgaatctcaacattagcatcaggtgctggcacaactttagactctttaaaattccatccaactgattcctgtcttacatgtccttt |
171444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University