View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_16 (Length: 394)
Name: NF3639_low_16
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 87 - 384
Target Start/End: Complemental strand, 10850741 - 10850444
Alignment:
| Q |
87 |
atattaagatagcttactatacttaattaggtattactagtactacgaaccgatgcgtaccggagctctataccccatatgtaccgaattcttctcaatt |
186 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10850741 |
atattaagatagcttactatacttaattaggtattactagtactacgaaccgatgcgtaccggagctctataccccatatataccgaattcttctcaatt |
10850642 |
T |
|
| Q |
187 |
atgtgactattggtggtggtggtagtagtaaactgatatacatatatcgtcaagccttcggtttatgttgtttatattatttcttacattcactttcttt |
286 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10850641 |
atgtgactattggcggtggtggtggtagtaaactgatatacatatatcgtcaagccttcagtttatgttgtttatattatttcttacattcactttcttt |
10850542 |
T |
|
| Q |
287 |
ataaataataatcatataaattttttccttgcagattaacataattcactcacctgatttcactcttgaggaggttcagactgctttgcctgcctttg |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10850541 |
ataaataataatcatataaattttttccttgcagattaacataattcactcacctgatttcactcttgaggaggttcagactgctttgcctgcctttg |
10850444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 87 - 384
Target Start/End: Complemental strand, 10878255 - 10877958
Alignment:
| Q |
87 |
atattaagatagcttactatacttaattaggtattactagtactacgaaccgatgcgtaccggagctctataccccatatgtaccgaattcttctcaatt |
186 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10878255 |
atattaagatagcttactatacttaattaggtattactagtactacgaaccgatgcgtaccggagctctataccccatatataccgaattcttctcaatt |
10878156 |
T |
|
| Q |
187 |
atgtgactattggtggtggtggtagtagtaaactgatatacatatatcgtcaagccttcggtttatgttgtttatattatttcttacattcactttcttt |
286 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10878155 |
atgtgactattggcggtggtggtggtagtaaactgatatacatatatcgtcaagccttcagtttatgttgtttatattatttcttacattcactttcttt |
10878056 |
T |
|
| Q |
287 |
ataaataataatcatataaattttttccttgcagattaacataattcactcacctgatttcactcttgaggaggttcagactgctttgcctgcctttg |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878055 |
ataaataataatcatataaattttttccttgcagattaacataattcactcacctgatttcactcttgaggaggttcagactgctttgcctgcctttg |
10877958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 32964559 - 32964485
Alignment:
| Q |
87 |
atattaagatagcttactatacttaattaggtattactagtactacgaaccgatgcgtaccggagctctataccc |
161 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| ||| ||||||||||| | ||| |||| |||||||||||| |
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|
| T |
32964559 |
atattaagatagcttgcaatacttaattaggtagtaccagtactacgaatcagtgcataccaaagctctataccc |
32964485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 3278715 - 3278678
Alignment:
| Q |
87 |
atattaagatagcttactatacttaattaggtattact |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
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| T |
3278715 |
atattaagatagcttactatacttaattaggtagtact |
3278678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 26351967 - 26352036
Alignment:
| Q |
94 |
gatagcttactatacttaattaggtattactagtactacgaaccgatgcgtaccggagctctatacccca |
163 |
Q |
| |
|
|||||||||||| |||||||||| || || ||||||||||||||||||| ||||| | |||||||||||| |
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|
| T |
26351967 |
gatagcttactacacttaattagatactattagtactacgaaccgatgcataccgaaactctatacccca |
26352036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 41486346 - 41486294
Alignment:
| Q |
87 |
atattaagatagcttactatacttaattaggtattactagtactacgaaccga |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||| || ||||||||||||||||||| |
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|
| T |
41486346 |
atattaagatagcttattatacttaattaaatagtactagtactacgaaccga |
41486294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 41490631 - 41490587
Alignment:
| Q |
92 |
aagatagcttactatacttaattaggtattactagtactacgaac |
136 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
41490631 |
aagatagcttacaatacttaattaaatagtactagtactacgaac |
41490587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 22276396 - 22276301
Alignment:
| Q |
87 |
atattaagatagcttactatacttaattaggtattactagtactacgaaccgatgcgtaccggagctctataccccatatgtaccgaattcttctca |
183 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| || |||||||||||||||| | |||||||| || |||| | |||| ||| |||||||||||| |
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|
| T |
22276396 |
atattaagataactta-tatacttaattaggtaatattagtactacgaaccgacgtgtaccggaactttatatcacatacgtaatgaattcttctca |
22276301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 2354039 - 2353961
Alignment:
| Q |
104 |
tatacttaattaggtattactagtactacgaaccgatgcgtaccggagctctata-ccccatatgtaccgaattcttct |
181 |
Q |
| |
|
|||| |||||||||||||| ||||||||| |||||| |||||||| ||||||||| || |||| ||||| ||||||||| |
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| T |
2354039 |
tatatttaattaggtattattagtactacaaaccgaagcgtaccgaagctctatatcctcatacgtaccaaattcttct |
2353961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 183
Target Start/End: Complemental strand, 24824323 - 24824248
Alignment:
| Q |
109 |
ttaattaggtattactagtactacgaaccgatgcgtaccggagctctatac-cccatatgtaccgaattcttctca |
183 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| || |||||| | |||||||||||||||||||| |
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|
| T |
24824323 |
ttaattaggtattactagtgctacgaaccgaagcgtaccgaagtcctatactttcttatgtaccgaattcttctca |
24824248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 30240174 - 30240104
Alignment:
| Q |
124 |
tagtactacgaaccgatgcgtaccggagctctataccccatatgtaccgaattcttctcaattatgtgactat |
196 |
Q |
| |
|
||||||| ||||| || |||||| | |||||||||||||||| |||||||||||||| || ||||||||||| |
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|
| T |
30240174 |
tagtactgcgaacagacgcgtactgaagctctataccccatacgtaccgaattcttcaca--tatgtgactat |
30240104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 45982941 - 45982994
Alignment:
| Q |
127 |
tactacgaaccgatgcgtaccggagctctataccccatatgtaccgaattcttc |
180 |
Q |
| |
|
||||||||||||| |||||||| || | ||||||||||| |||||||||||||| |
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|
| T |
45982941 |
tactacgaaccgacgcgtaccgaagatttataccccatacgtaccgaattcttc |
45982994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 148
Target Start/End: Complemental strand, 47543292 - 47543253
Alignment:
| Q |
109 |
ttaattaggtattactagtactacgaaccgatgcgtaccg |
148 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||| |
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|
| T |
47543292 |
ttaattaggtattactattattacgaaccgatgcgtaccg |
47543253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 13574232 - 13574176
Alignment:
| Q |
125 |
agtactacgaaccgatgcgtaccggagctctataccccatatgtaccgaattcttct |
181 |
Q |
| |
|
|||||||||||| || ||| ||| ||||||||| ||||||||||||||||||||| |
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|
| T |
13574232 |
agtactacgaactgacgcgaaccaaagctctatattccatatgtaccgaattcttct |
13574176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 180
Target Start/End: Original strand, 10385856 - 10385946
Alignment:
| Q |
94 |
gatagcttactatacttaattaggtattacta---gtactacgaaccgatgcgtaccggagctctatacccc-atatgtaccgaattcttc |
180 |
Q |
| |
|
|||||||||||||||| ||||||||| || || |||| ||||||| ||||||| | |||||| |||||| ||||||||| |||||||| |
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| T |
10385856 |
gatagcttactatactgaattaggtactagtattggtaccacgaaccaatgcgtatcaaagctctgtacccctatatgtacctaattcttc |
10385946 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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