View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3639_low_18 (Length: 385)

Name: NF3639_low_18
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3639_low_18
NF3639_low_18
[»] chr3 (28 HSPs)
chr3 (148-369)||(53678120-53678339)
chr3 (1-67)||(53678418-53678484)
chr3 (1-54)||(51311853-51311906)
chr3 (1-59)||(40639452-40639510)
chr3 (1-55)||(34521263-34521317)
chr3 (1-53)||(5348903-5348955)
chr3 (1-49)||(37133280-37133328)
chr3 (1-53)||(54108455-54108507)
chr3 (1-56)||(5348575-5348630)
chr3 (1-52)||(13866999-13867050)
chr3 (1-52)||(40969255-40969306)
chr3 (1-52)||(47891513-47891564)
chr3 (4-58)||(4846934-4846988)
chr3 (1-55)||(9028188-9028242)
chr3 (1-39)||(39198430-39198468)
chr3 (1-54)||(37133550-37133603)
chr3 (5-54)||(40969593-40969642)
chr3 (1-54)||(41208399-41208452)
chr3 (1-50)||(49529155-49529204)
chr3 (1-53)||(7274652-7274704)
chr3 (1-57)||(12123414-12123470)
chr3 (4-56)||(20963627-20963679)
chr3 (1-49)||(21918500-21918548)
chr3 (1-53)||(28688325-28688377)
chr3 (1-53)||(41997818-41997870)
chr3 (9-53)||(44316626-44316670)
chr3 (1-53)||(45871696-45871748)
chr3 (1-49)||(49222360-49222408)
[»] chr1 (30 HSPs)
chr1 (1-54)||(4550935-4550988)
chr1 (2-51)||(3569377-3569426)
chr1 (1-54)||(20260714-20260767)
chr1 (1-54)||(24655921-24655974)
chr1 (1-53)||(11788075-11788127)
chr1 (1-53)||(27209168-27209220)
chr1 (1-53)||(40703200-40703252)
chr1 (1-53)||(50921426-50921478)
chr1 (1-48)||(2125537-2125584)
chr1 (1-60)||(25088008-25088067)
chr1 (10-53)||(40702867-40702910)
chr1 (1-39)||(1040146-1040184)
chr1 (1-39)||(1047052-1047090)
chr1 (1-55)||(16268024-16268078)
chr1 (1-39)||(24231492-24231530)
chr1 (1-39)||(24381168-24381206)
chr1 (1-47)||(40534260-40534306)
chr1 (1-54)||(9881550-9881603)
chr1 (1-50)||(18793693-18793742)
chr1 (1-54)||(23281345-23281398)
chr1 (1-54)||(33753223-33753276)
chr1 (4-49)||(34621973-34622018)
chr1 (1-54)||(36077269-36077322)
chr1 (4-49)||(40533928-40533973)
chr1 (1-41)||(7334454-7334494)
chr1 (1-49)||(10923365-10923413)
chr1 (1-53)||(10923698-10923750)
chr1 (1-41)||(20260439-20260479)
chr1 (1-41)||(33784313-33784353)
chr1 (1-53)||(52412597-52412649)
[»] chr7 (15 HSPs)
chr7 (1-53)||(36507144-36507196)
chr7 (1-57)||(28263491-28263547)
chr7 (1-52)||(37143764-37143815)
chr7 (2-52)||(22338272-22338322)
chr7 (1-56)||(37144098-37144153)
chr7 (1-40)||(47305139-47305178)
chr7 (1-39)||(30284232-30284270)
chr7 (1-59)||(38677077-38677135)
chr7 (1-54)||(35085737-35085790)
chr7 (1-41)||(14683001-14683041)
chr7 (1-41)||(20494235-20494275)
chr7 (5-53)||(22338615-22338663)
chr7 (1-53)||(24119713-24119765)
chr7 (1-49)||(28349715-28349763)
chr7 (1-53)||(31715956-31716008)
[»] chr6 (11 HSPs)
chr6 (2-53)||(2814647-2814698)
chr6 (1-64)||(17245659-17245722)
chr6 (1-39)||(3366511-3366549)
chr6 (1-60)||(3338469-3338528)
chr6 (1-52)||(6229721-6229772)
chr6 (5-52)||(24548241-24548288)
chr6 (5-52)||(29999742-29999789)
chr6 (1-52)||(32283026-32283077)
chr6 (1-39)||(2315592-2315630)
chr6 (1-39)||(10914573-10914611)
chr6 (1-41)||(24548576-24548616)
[»] chr2 (16 HSPs)
chr2 (2-55)||(35408857-35408910)
chr2 (1-53)||(27246318-27246370)
chr2 (1-57)||(43183918-43183974)
chr2 (1-56)||(39454447-39454502)
chr2 (1-52)||(41659745-41659796)
chr2 (1-39)||(12966237-12966275)
chr2 (1-39)||(25334616-25334654)
chr2 (1-39)||(25882005-25882043)
chr2 (1-50)||(37412595-37412644)
chr2 (1-54)||(44915738-44915791)
chr2 (1-49)||(1580176-1580224)
chr2 (1-53)||(16736100-16736152)
chr2 (1-53)||(20908510-20908562)
chr2 (1-53)||(27476702-27476754)
chr2 (5-49)||(27913897-27913941)
chr2 (1-53)||(31450665-31450717)
[»] chr5 (14 HSPs)
chr5 (1-56)||(5152950-5153005)
chr5 (1-53)||(19185583-19185635)
chr5 (1-39)||(1031311-1031349)
chr5 (1-55)||(5088463-5088517)
chr5 (1-55)||(7399074-7399128)
chr5 (1-39)||(14233101-14233139)
chr5 (1-54)||(2596386-2596439)
chr5 (11-60)||(5152608-5152657)
chr5 (1-54)||(16353489-16353542)
chr5 (1-54)||(35263492-35263545)
chr5 (1-54)||(38416141-38416194)
chr5 (4-53)||(38416472-38416521)
chr5 (1-53)||(3878480-3878532)
chr5 (1-41)||(13824653-13824693)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-53)||(93549-93600)
[»] chr4 (15 HSPs)
chr4 (1-57)||(9010500-9010556)
chr4 (1-53)||(44169978-44170030)
chr4 (1-61)||(44710394-44710454)
chr4 (1-40)||(1369880-1369919)
chr4 (1-52)||(45683117-45683168)
chr4 (1-39)||(17259479-17259517)
chr4 (1-39)||(25619099-25619137)
chr4 (1-39)||(42018894-42018932)
chr4 (1-39)||(44304369-44304407)
chr4 (1-58)||(43317214-43317271)
chr4 (1-53)||(9657982-9658034)
chr4 (1-53)||(21217846-21217898)
chr4 (1-41)||(46579788-46579828)
chr4 (1-53)||(48209947-48209999)
chr4 (1-53)||(54136090-54136142)
[»] chr8 (14 HSPs)
chr8 (1-40)||(3444127-3444166)
chr8 (1-56)||(7041959-7042014)
chr8 (1-60)||(12873381-12873440)
chr8 (1-60)||(30872775-30872834)
chr8 (1-60)||(35223766-35223825)
chr8 (1-56)||(35224102-35224157)
chr8 (1-52)||(40032426-40032477)
chr8 (1-39)||(25825309-25825347)
chr8 (1-39)||(26060639-26060677)
chr8 (1-54)||(29027303-29027356)
chr8 (1-53)||(24456733-24456785)
chr8 (1-49)||(26736128-26736176)
chr8 (1-53)||(29770398-29770450)
chr8 (1-53)||(33542383-33542435)
[»] scaffold0809 (1 HSPs)
scaffold0809 (1-54)||(4653-4706)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 148 - 369
Target Start/End: Complemental strand, 53678339 - 53678120
Alignment:
Q  148 atttaatatatgtgaaatctttaacgtgtatgccctttgttagtgcatgagtcaatnnnnnnngtccgtaacttaggaatttgcaccatgctgaagccat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  53678339 atttaatatatgtgaaatctttaacgtgtatgccctttgttagtgcatgagtcaataaaaaa-gtccgtaacttaggaatttgcaccatgctgaagccat 53678241  T
Q  248 ccccatccatccacaactctgctctgctgtagtgctgtgtaaccgttccctcccacgcggcaaatcatcttctttaattttttcagcttttctcagaact 347  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53678240 ccc-atccatccacaactctgctctgctgtagtgctgtgtaaccgttccctcccacgcggcaaatcatcttctttaattttttcagcttttctcagaact 53678142  T
Q  348 taattgctttgtacttttactt 369  Q
    ||||||||||||||||||||||    
T  53678141 taattgctttgtacttttactt 53678120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 53678484 - 53678418
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataatattttacat 67  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||||    
T  53678484 gaccaaagcgatactatttaaataattaagggaccaaaaacgtaatttaaccaataatattttacat 53678418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51311853 - 51311906
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||||||||||    
T  51311853 gaccaaagcgatactaattaaatagttaacagaccaaaaatgtaatttagccta 51311906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40639452 - 40639510
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataata 59  Q
    |||||||||||||||||||||||| ||||  |||||||||| |||||||||||| ||||    
T  40639452 gaccaaagcgatactaattaaatagttaaaggaccaaaaacataatttagcctaaaata 40639510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 34521317 - 34521263
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctat 55  Q
    ||||||||||||||||  |||||||||||| ||||||||| | ||||||||||||    
T  34521317 gaccaaagcgatactacctaaataattaagggaccaaaaatgcaatttagcctat 34521263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5348903 - 5348955
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||||||||||||||| ||||  ||| |||||| |||||||||||    
T  5348903 gaccaaagcgatactaattaaatagttaaaggacaaaaaacataatttagcct 5348955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 37133328 - 37133280
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    ||||||||||||||||||||||||  |||| |||||||||| |||||||    
T  37133328 gaccaaagcgatactaattaaatagctaagggaccaaaaacataattta 37133280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 54108455 - 54108507
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||||||||| ||||||||| | ||||||||||    
T  54108455 gaccaaagcgatactagctaaataattaagggaccaaaaatgcaatttagcct 54108507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5348630 - 5348575
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctata 56  Q
    |||||||||||||||||||||||| ||||| ||| ||||| | |||||| ||||||    
T  5348630 gaccaaagcgatactaattaaatagttaagggactaaaaatgcaatttaacctata 5348575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13866999 - 13867050
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    ||||||| |||||||||||||||| ||||| ||||||||| | |||||||||    
T  13866999 gaccaaaccgatactaattaaatagttaagggaccaaaaatgcaatttagcc 13867050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40969306 - 40969255
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    |||||||||||||||||||||||| ||||| ||| ||||| | |||||||||    
T  40969306 gaccaaagcgatactaattaaatagttaagggactaaaaatgcaatttagcc 40969255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 47891564 - 47891513
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    |||||||||||||||||||||||  ||||| ||||||| || ||||||||||    
T  47891564 gaccaaagcgatactaattaaattgttaagggaccaaatacataatttagcc 47891513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 4846934 - 4846988
Alignment:
Q  4 caaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataat 58  Q
    |||||||||||||  |||||| ||||| ||||||||| | |||||||||||||||    
T  4846934 caaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcctataat 4846988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 9028242 - 9028188
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctat 55  Q
    |||||||| |||||||  |||||| ||||| ||||||||| ||||||||||||||    
T  9028242 gaccaaagtgatactacctaaatagttaagggaccaaaaatgtaatttagcctat 9028188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 39198468 - 39198430
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  39198468 gaccaaagcgataccaattaaataattaagggaccaaaa 39198430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 37133550 - 37133603
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||| | |||||||||||||||||||  |||||||||  ||||||||||||    
T  37133550 gaccaaaacaatactaattaaataattaaaggaccaaaaatataatttagccta 37133603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 40969593 - 40969642
Alignment:
Q  5 aaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    |||||||||||||||||||| ||||| |||||||||  ||||||| ||||    
T  40969593 aaagcgatactaattaaatagttaagggaccaaaaatataatttaaccta 40969642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41208452 - 41208399
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    |||||||||||||||| ||||||| ||||| ||||||||| | |||||| ||||    
T  41208452 gaccaaagcgatactacttaaatagttaagggaccaaaaatgcaatttaaccta 41208399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 49529155 - 49529204
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttag 50  Q
    ||||||| |||||||||||||||| ||||| ||||||||| | |||||||    
T  49529155 gaccaaaccgatactaattaaatagttaagggaccaaaaatgcaatttag 49529204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 7274704 - 7274652
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||    
T  7274704 gaccaaagcgatactacctaaatatttaagggaccaaaaatgcaatttagcct 7274652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12123414 - 12123470
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataa 57  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | |||||| |||||||    
T  12123414 gaccaaagcgatactacctaaatagttaagggaccaaaaatgaaatttaacctataa 12123470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 20963627 - 20963679
Alignment:
Q  4 caaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctata 56  Q
    |||| |||||||||||||||| ||||| ||||||||| | |||| ||||||||    
T  20963627 caaaccgatactaattaaatagttaagggaccaaaaaggcaattaagcctata 20963679  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21918548 - 21918500
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    |||||||| ||||||||||||||| ||||| ||||||||| | ||||||    
T  21918548 gaccaaagtgatactaattaaatagttaagggaccaaaaatgcaattta 21918500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28688325 - 28688377
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||| ||||| ||||||||||||    
T  28688325 gaccaaagcgatactacctaaatagttaagggacaaaaaatgtaatttagcct 28688377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41997870 - 41997818
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||| ||||||||  |||||| ||||| ||||||||| ||||||||||||    
T  41997870 gaccaaaacgatactacctaaatagttaagggaccaaaaatgtaatttagcct 41997818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 44316670 - 44316626
Alignment:
Q  9 cgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||||||| ||||| ||||||||| | ||||||||||    
T  44316670 cgatactaattaaatagttaagggaccaaaaatgcaatttagcct 44316626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45871748 - 45871696
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||    
T  45871748 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcct 45871696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 49222360 - 49222408
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    ||||||| ||||||||  |||||| ||||||||||| ||||||||||||    
T  49222360 gaccaaaacgatactatctaaatagttaagagaccagaaacgtaattta 49222408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4550935 - 4550988
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    |||||||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  4550935 gaccaaagcgatactaattaaatagttaagagaccaaaaatgcaatttagccta 4550988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 3569426 - 3569377
Alignment:
Q  2 accaaagcgatactaattaaataattaagagaccaaaaacgtaatttagc 51  Q
    |||||| |||||||||||||||||||||| |||||||||| |||||||||    
T  3569426 accaaaacgatactaattaaataattaagggaccaaaaacataatttagc 3569377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20260714 - 20260767
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||| |||||||||||||||||||||| ||| ||||| | |||||||||||    
T  20260714 gaccaaaacgatactaattaaataattaagggactaaaaatgcaatttagccta 20260767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24655921 - 24655974
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    |||||||||||||||| ||||||| ||||||||| ||||| | |||||||||||    
T  24655921 gaccaaagcgatactacttaaatagttaagagactaaaaatgcaatttagccta 24655974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11788075 - 11788127
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||||||  |||||||||||| |||||||||| | ||||||||||    
T  11788075 gaccaaagcgatactgcttaaataattaaaagaccaaaaatgcaatttagcct 11788127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 27209220 - 27209168
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||| |||| |||||||||| ||||| |||||||||| |||||||||||    
T  27209220 gaccaaagtgatattaattaaatagttaagggaccaaaaacataatttagcct 27209168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40703200 - 40703252
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||||||||||||||| ||||| ||||||||| | ||||| ||||    
T  40703200 gaccaaagcgatactaattaaatagttaagggaccaaaaatgcaattttgcct 40703252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50921426 - 50921478
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| ||||||||||||    
T  50921426 gaccaaagcgatactacctaaatagttaagggaccaaaaatgtaatttagcct 50921478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2125537 - 2125584
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaattt 48  Q
    ||||||||||||||||  |||||||||||| ||||||||| |||||||    
T  2125537 gaccaaagcgatactacctaaataattaagggaccaaaaatgtaattt 2125584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25088067 - 25088008
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataatat 60  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||| |||||    
T  25088067 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcctaaaatat 25088008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 53
Target Start/End: Complemental strand, 40702910 - 40702867
Alignment:
Q  10 gatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||    
T  40702910 gatactaattaaatagttaagggaccaaaaacataatttagcct 40702867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1040146 - 1040184
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  1040146 gaccaaagcgataccaattaaatatttaagagaccaaaa 1040184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1047052 - 1047090
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  1047052 gaccaaagcgataccaattaaatatttaagagaccaaaa 1047090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 16268024 - 16268078
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctat 55  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||||    
T  16268024 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcctat 16268078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24231492 - 24231530
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  24231492 gaccaaagcgataccaattaaatagttaagagaccaaaa 24231530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 24381168 - 24381206
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  24381168 gaccaaagcgataccaattaaataattaagggaccaaaa 24381206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40534260 - 40534306
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatt 47  Q
    |||||||||||||||||||||||| ||||| || ||||||| |||||    
T  40534260 gaccaaagcgatactaattaaatagttaagggatcaaaaacataatt 40534306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9881603 - 9881550
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | |||||||||||    
T  9881603 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagccta 9881550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 18793742 - 18793693
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttag 50  Q
    ||||||||||||||||  |||||||||||| ||||||||| | |||||||    
T  18793742 gaccaaagcgatactacctaaataattaagggaccaaaaatgaaatttag 18793693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23281345 - 23281398
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | |||||||||||    
T  23281345 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagccta 23281398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33753276 - 33753223
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | |||||||||||    
T  33753276 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagccta 33753223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 34621973 - 34622018
Alignment:
Q  4 caaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    |||| |||||||||||||||| ||||| |||||||||| |||||||    
T  34621973 caaaacgatactaattaaatagttaagggaccaaaaacataattta 34622018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36077322 - 36077269
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    |||||||| |||||||  |||||||||||| ||||||||| | |||||||||||    
T  36077322 gaccaaagtgatactacctaaataattaagggaccaaaaatgcaatttagccta 36077269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 40533973 - 40533928
Alignment:
Q  4 caaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    ||||||||||||||||||||| ||||||||| ||||| | ||||||    
T  40533973 caaagcgatactaattaaatagttaagagactaaaaatgcaattta 40533928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7334494 - 7334454
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaac 41  Q
    |||||||||||||| ||||||||| ||||| ||||||||||    
T  7334494 gaccaaagcgataccaattaaatagttaagggaccaaaaac 7334454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10923413 - 10923365
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    ||||||||||||||||  |||||||||||| |||||||||  |||||||    
T  10923413 gaccaaagcgatactacctaaataattaagggaccaaaaatataattta 10923365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 10923698 - 10923750
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||||| | ||||||| ||||| ||||||||| | ||||||||||    
T  10923698 gaccaaagcgataccacttaaatagttaagggaccaaaaatgcaatttagcct 10923750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20260479 - 20260439
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaac 41  Q
    |||||||  ||||||||||||||| ||||||||||||||||    
T  20260479 gaccaaaatgatactaattaaatagttaagagaccaaaaac 20260439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33784353 - 33784313
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaac 41  Q
    |||||||||||||| ||||||||| ||||| ||||||||||    
T  33784353 gaccaaagcgataccaattaaatagttaagggaccaaaaac 33784313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 52412649 - 52412597
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| ||| ||||||||    
T  52412649 gaccaaagcgatactacctaaatagttaagggaccaaaaatgtattttagcct 52412597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 36507144 - 36507196
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||| |||||||||||||||| |||||||||||||||| |||||||||||    
T  36507144 gaccaaatcgatactaattaaatagttaagagaccaaaaacataatttagcct 36507196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 28263547 - 28263491
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataa 57  Q
    ||||||| |||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  28263547 gaccaaaccgatactaattaaatagttaagggatcaaaaaagtaatttagcctataa 28263491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37143815 - 37143764
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    ||||||| |||||||||||||||| ||||| |||||||||| ||||||||||    
T  37143815 gaccaaaacgatactaattaaatagttaagggaccaaaaacataatttagcc 37143764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 22338322 - 22338272
Alignment:
Q  2 accaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    |||||||| |||||||||||||| ||||| |||||||||| ||||||||||    
T  22338322 accaaagcaatactaattaaatagttaagggaccaaaaacataatttagcc 22338272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37144098 - 37144153
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctata 56  Q
    ||||||| |||||||||||||||| ||||| ||||||||| | |||||| ||||||    
T  37144098 gaccaaaacgatactaattaaatagttaagggaccaaaaatgcaatttaacctata 37144153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 47305178 - 47305139
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaa 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  47305178 gaccaaagcgatactaattaaatagttaagggaccaaaaa 47305139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 30284232 - 30284270
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    ||||||||||||||||| |||||| ||||||||||||||    
T  30284232 gaccaaagcgatactaaataaatacttaagagaccaaaa 30284270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 38677077 - 38677135
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataata 59  Q
    ||||||| ||| || ||||||||| ||||| ||||||||| ||||||||||||| ||||    
T  38677077 gaccaaaccgaaaccaattaaatagttaagggaccaaaaaggtaatttagcctaaaata 38677135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35085790 - 35085737
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | |||||||||||    
T  35085790 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagccta 35085737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14683001 - 14683041
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaac 41  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  14683001 gaccaaagcgataccaaataaatagttaagagaccaaaaac 14683041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20494235 - 20494275
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaac 41  Q
    ||||||| |||||| ||||||||||||||| ||||||||||    
T  20494235 gaccaaaacgataccaattaaataattaagggaccaaaaac 20494275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 22338615 - 22338663
Alignment:
Q  5 aaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||| || ||||| ||||||||| | ||||||||||    
T  22338615 aaagcgatactaattaattagttaagggaccaaaaatgcaatttagcct 22338663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24119765 - 24119713
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||| |||||||  |||||| |||||| |||||||| ||||||||||||    
T  24119765 gaccaaagtgatactatctaaatagttaagaaaccaaaaatgtaatttagcct 24119713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28349715 - 28349763
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    ||||||| | |||||||||||||| ||||| |||||||||| |||||||    
T  28349715 gaccaaaacaatactaattaaatagttaagggaccaaaaacataattta 28349763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31715956 - 31716008
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||    
T  31715956 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcct 31716008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 2814647 - 2814698
Alignment:
Q  2 accaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||| ||||    
T  2814647 accaaagcgatactaattaaatagttaagagaccaaaaacataatttggcct 2814698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17245659 - 17245722
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataatatttta 64  Q
    ||||||| |||||||||||||||||||||| ||||||||| | |||||||||| || |||||||    
T  17245659 gaccaaaccgatactaattaaataattaagggaccaaaaatgcaatttagcctttattatttta 17245722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3366549 - 3366511
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  3366549 gaccaaagcgataccaattaaataattaagagaccaaaa 3366511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3338528 - 3338469
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataatat 60  Q
    ||||||||||||||||  |||||| ||||| ||| ||||| | |||||||||||||||||    
T  3338528 gaccaaagcgatactacctaaatagttaagggacaaaaaatgcaatttagcctataatat 3338469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6229721 - 6229772
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    ||||||| |||||||||||||||| ||||| ||||||||| | |||||||||    
T  6229721 gaccaaaccgatactaattaaatagttaagggaccaaaaaggcaatttagcc 6229772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 24548288 - 24548241
Alignment:
Q  5 aaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    |||||||||||||||||||| ||||| ||||||||| | |||||||||    
T  24548288 aaagcgatactaattaaatagttaagggaccaaaaatgcaatttagcc 24548241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 29999742 - 29999789
Alignment:
Q  5 aaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    |||||||||||||||||||| |||||||| ||| ||| ||||||||||    
T  29999742 aaagcgatactaattaaatagttaagagatcaataacataatttagcc 29999789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32283077 - 32283026
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    |||||||| ||||||||||||||| ||||| |||||||||  ||||||||||    
T  32283077 gaccaaagtgatactaattaaatagttaagggaccaaaaatataatttagcc 32283026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2315630 - 2315592
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  2315630 gaccaaagcgatactaattaaatagttaagaaaccaaaa 2315592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10914611 - 10914573
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  10914611 gaccaaagcgataccaattaaatatttaagagaccaaaa 10914573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24548576 - 24548616
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaac 41  Q
    |||||||| ||||||||||||||| ||||| ||||||||||    
T  24548576 gaccaaagtgatactaattaaatagttaagggaccaaaaac 24548616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 35408857 - 35408910
Alignment:
Q  2 accaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctat 55  Q
    ||||||||||||||||||||||| ||||  |||||||||| |||||||||||||    
T  35408857 accaaagcgatactaattaaatagttaatggaccaaaaacataatttagcctat 35408910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27246318 - 27246370
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||| ||||||||||| ||||| ||||||||| | ||||||||||    
T  27246318 gaccaaagcgatcctaattaaatagttaagggaccaaaaatgcaatttagcct 27246370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43183918 - 43183974
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataa 57  Q
    ||||||||||||||||  |||||||||||| ||||||||| | |||||| |||||||    
T  43183918 gaccaaagcgatactacctaaataattaagggaccaaaaatgcaatttaacctataa 43183974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 39454502 - 39454447
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctata 56  Q
    |||||||| ||||||| ||||||| ||||| ||||||||| | |||||||||||||    
T  39454502 gaccaaagtgatactacttaaatagttaagggaccaaaaatgcaatttagcctata 39454447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41659796 - 41659745
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    |||||||||||||||||||||||| ||||| ||| |||||  ||||||||||    
T  41659796 gaccaaagcgatactaattaaatagttaagggacaaaaaatataatttagcc 41659745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12966237 - 12966275
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  12966237 gaccaaagcgataccaattaaatacttaagagaccaaaa 12966275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25334616 - 25334654
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  25334616 gaccaaagcgataccaattaaatagttaagagaccaaaa 25334654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25882043 - 25882005
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  25882043 gaccaaagcgataccaattaaatagttaagagaccaaaa 25882005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 37412644 - 37412595
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttag 50  Q
    ||||||||||||||||| |||||| ||||| ||||||||| | |||||||    
T  37412644 gaccaaagcgatactaactaaatagttaagggaccaaaaatgcaatttag 37412595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44915791 - 44915738
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    |||||||||||||||||||||||| ||||| ||| ||||| | |||||| ||||    
T  44915791 gaccaaagcgatactaattaaatagttaagggactaaaaatgcaatttaaccta 44915738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1580176 - 1580224
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    |||||||||||||||| ||||||| |||||  ||||||||| |||||||    
T  1580176 gaccaaagcgatactatttaaatagttaaggaaccaaaaacataattta 1580224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16736152 - 16736100
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||    
T  16736152 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcct 16736100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 20908562 - 20908510
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||||||||| |||||||||   ||||||||||    
T  20908562 gaccaaagcgatactacctaaataattaagggaccaaaaatacaatttagcct 20908510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 27476702 - 27476754
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||| ||||||||  |||||| ||||||||||||||| | ||||||||||    
T  27476702 gaccaaaacgatactacctaaatagttaagagaccaaaaatgcaatttagcct 27476754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 27913941 - 27913897
Alignment:
Q  5 aaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    |||||||||||||||||||| |||||  ||||||||| |||||||    
T  27913941 aaagcgatactaattaaatagttaaggaaccaaaaacataattta 27913897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 31450717 - 31450665
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||    
T  31450717 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcct 31450665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 5152950 - 5153005
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctata 56  Q
    ||||||||||||||||| |||||| ||||| |||||||||| ||||||||| ||||    
T  5152950 gaccaaagcgatactaaataaatagttaagggaccaaaaacataatttagcatata 5153005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 19185583 - 19185635
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||| | |||||||||||||| ||||| ||||||||| ||||||||||||    
T  19185583 gaccaaaccaatactaattaaatagttaagggaccaaaaaggtaatttagcct 19185635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1031311 - 1031349
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  1031311 gaccaaagcgataccaattaaatagttaagagaccaaaa 1031349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5088463 - 5088517
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctat 55  Q
    ||||||||||||||||  |||||| |||||||||||||||   ||||||||||||    
T  5088463 gaccaaagcgatactacctaaatagttaagagaccaaaaatacaatttagcctat 5088517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7399128 - 7399074
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctat 55  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||||    
T  7399128 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcctat 7399074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14233101 - 14233139
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  14233101 gaccaaagcgataccaattaaatacttaagagaccaaaa 14233139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2596439 - 2596386
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||| ||| || ||||||||| ||||| ||||||||| |||||||||||||    
T  2596439 gaccaaaccgaaaccaattaaatagttaagggaccaaaaaggtaatttagccta 2596386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 5152657 - 5152608
Alignment:
Q  11 atactaattaaataattaagagaccaaaaacgtaatttagcctataatat 60  Q
    |||||||||| ||| ||||| ||||||||| | |||||||||||||||||    
T  5152657 atactaattacatagttaagggaccaaaaatgcaatttagcctataatat 5152608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16353489 - 16353542
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    |||||||||||||||| ||||||| ||||| || |||||| | |||||||||||    
T  16353489 gaccaaagcgatactacttaaatagttaagggatcaaaaatgcaatttagccta 16353542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35263545 - 35263492
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | |||||||||||    
T  35263545 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagccta 35263492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 38416194 - 38416141
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||||||||||||  |||||||||||||||  ||||| | |||||||||||    
T  38416194 gaccaaagcgatactacctaaataattaagagattaaaaatgcaatttagccta 38416141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 38416472 - 38416521
Alignment:
Q  4 caaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||||  ||||||||||||||||||||||   ||||||||||    
T  38416472 caaagcgatactacctaaataattaagagaccaaaaatacaatttagcct 38416521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 3878532 - 3878480
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||||||||| |||||||||   ||||||||||    
T  3878532 gaccaaagcgatactacctaaataattaagggaccaaaaatacaatttagcct 3878480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13824653 - 13824693
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaac 41  Q
    |||||||||||||| ||||||||| ||||| ||||||||||    
T  13824653 gaccaaagcgataccaattaaatacttaagggaccaaaaac 13824693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 93549 - 93600
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||||||||||||||| |||||||| | ||||| |||||||||||    
T  93549 gaccaaagcgatactaattaaatagttaagagaac-aaaacataatttagcct 93600  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 9010556 - 9010500
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataa 57  Q
    |||||||| |||||||  |||||||||||| ||||||||| | ||||||||||||||    
T  9010556 gaccaaagtgatactacctaaataattaagggaccaaaaatgcaatttagcctataa 9010500  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 44170030 - 44169978
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||||||||||||||| ||||| |||||||||   ||||||||||    
T  44170030 gaccaaagcgatactaattaaatagttaagggaccaaaaatacaatttagcct 44169978  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 44710454 - 44710394
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataatatt 61  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||| ||||||||    
T  44710454 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcccataatatt 44710394  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1369919 - 1369880
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaa 40  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  1369919 gaccaaagcgatactaattaaatatttaagaaaccaaaaa 1369880  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 45683168 - 45683117
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    ||||||||||||||||  |||||| |||||||| |||||| |||||||||||    
T  45683168 gaccaaagcgatactacctaaatagttaagagatcaaaaatgtaatttagcc 45683117  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 17259479 - 17259517
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  17259479 gaccaaagcgatacaaattaaatagttaagagaccaaaa 17259517  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25619099 - 25619137
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  25619099 gaccaaagcgataccaattaaatagttaagagaccaaaa 25619137  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42018894 - 42018932
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||||||||||||||||||| || |||||    
T  42018894 gaccaaagcgatactaattaaataattaagggatcaaaa 42018932  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 44304369 - 44304407
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  44304369 gaccaaagcgataccaattaaatagttaagagaccaaaa 44304407  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 43317214 - 43317271
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataat 58  Q
    ||||||||||||||||  |||||| ||| ||||| ||||| | |||||||||||||||    
T  43317214 gaccaaagcgatactacctaaatagttaggagactaaaaatgcaatttagcctataat 43317271  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9657982 - 9658034
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||| |||||||||||||||| ||||| || ||||||  |||||||||||    
T  9657982 gaccaaaacgatactaattaaatagttaagggatcaaaaatataatttagcct 9658034  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21217898 - 21217846
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||    
T  21217898 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcct 21217846  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46579828 - 46579788
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaac 41  Q
    |||||||||||||| ||||||||| ||||| ||||||||||    
T  46579828 gaccaaagcgataccaattaaatagttaagggaccaaaaac 46579788  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 48209999 - 48209947
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||| |||||||  |||||| ||||| ||||||||| ||||||||||||    
T  48209999 gaccaaagtgatactacctaaatagttaagggaccaaaaatgtaatttagcct 48209947  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 54136142 - 54136090
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||    
T  54136142 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcct 54136090  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3444127 - 3444166
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaa 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  3444127 gaccaaagcgatactaattaaatacttaagggaccaaaaa 3444166  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 7041959 - 7042014
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctata 56  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | |||||||||||||    
T  7041959 gaccaaagcgatactatataaatagttaagggaccaaaaatgcaatttagcctata 7042014  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12873381 - 12873440
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataatat 60  Q
    ||||||| |||||||||||||||| ||||| |||||||||   ||||||||||| |||||    
T  12873381 gaccaaaacgatactaattaaatagttaagggaccaaaaatacaatttagcctaaaatat 12873440  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30872834 - 30872775
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataatat 60  Q
    ||||||||| ||||||  |||||| ||||| ||||||||| | |||||||||||||||||    
T  30872834 gaccaaagcaatactacctaaatagttaagggaccaaaaatgcaatttagcctataatat 30872775  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 35223825 - 35223766
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctataatat 60  Q
    ||||||||||||||||  |||||| | ||| ||||||||| | |||||||||||||||||    
T  35223825 gaccaaagcgatactacctaaatagtaaagggaccaaaaatgcaatttagcctataatat 35223766  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35224102 - 35224157
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcctata 56  Q
    ||||||| ||||||||| |||||| ||||| ||||||||| | |||||||||||||    
T  35224102 gaccaaaacgatactaactaaatagttaagggaccaaaaatgcaatttagcctata 35224157  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40032477 - 40032426
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcc 52  Q
    ||||||||||||||||  |||||||||||| ||||||||| | |||||||||    
T  40032477 gaccaaagcgatactacctaaataattaagtgaccaaaaatgcaatttagcc 40032426  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25825309 - 25825347
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  25825309 gaccaaagcgataccaattaaatagttaagagaccaaaa 25825347  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26060639 - 26060677
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaa 39  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  26060639 gaccaaagcgataccaattaaataattaagggaccaaaa 26060677  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29027303 - 29027356
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||| ||||||||  |||||| |||||||||||||||  ||||||||||||    
T  29027303 gaccaaaacgatactacctaaatagttaagagaccaaaaatataatttagccta 29027356  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 24456785 - 24456733
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | ||||||||||    
T  24456785 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagcct 24456733  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26736176 - 26736128
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaattta 49  Q
    ||||||||||||||||  |||||| ||||||||||||||| | ||||||    
T  26736176 gaccaaagcgatactacctaaatagttaagagaccaaaaatgcaattta 26736128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29770398 - 29770450
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    ||||||| ||| || ||||||||| ||||| ||||||||| ||||||||||||    
T  29770398 gaccaaaccgaaaccaattaaatagttaagggaccaaaaaggtaatttagcct 29770450  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33542435 - 33542383
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagcct 53  Q
    |||||||||||||||||||||||| ||||  |||||||||   ||||||||||    
T  33542435 gaccaaagcgatactaattaaatagttaaaggaccaaaaatacaatttagcct 33542383  T

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Target: scaffold0809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4653 - 4706
Alignment:
Q  1 gaccaaagcgatactaattaaataattaagagaccaaaaacgtaatttagccta 54  Q
    ||||||||||||||||  |||||| ||||| ||||||||| | |||||||||||    
T  4653 gaccaaagcgatactacctaaatagttaagggaccaaaaatgcaatttagccta 4706  T

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