View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3639_low_19 (Length: 381)

Name: NF3639_low_19
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3639_low_19
NF3639_low_19
[»] chr5 (6 HSPs)
chr5 (83-359)||(28198778-28199055)
chr5 (16-64)||(29322335-29322383)
chr5 (226-343)||(10703448-10703563)
chr5 (120-174)||(25664163-25664217)
chr5 (186-343)||(10698896-10699052)
chr5 (20-64)||(8894938-8894982)
[»] chr3 (7 HSPs)
chr3 (16-64)||(52195835-52195883)
chr3 (16-64)||(39633452-39633500)
chr3 (18-64)||(53813629-53813675)
chr3 (16-64)||(10753629-10753677)
chr3 (16-64)||(16663529-16663577)
chr3 (16-64)||(49238133-49238181)
chr3 (16-64)||(30737061-30737109)
[»] chr4 (4 HSPs)
chr4 (16-64)||(17469756-17469804)
chr4 (16-64)||(36950755-36950803)
chr4 (16-64)||(50694381-50694429)
chr4 (20-64)||(29192939-29192983)
[»] chr1 (4 HSPs)
chr1 (16-64)||(34024310-34024358)
chr1 (296-352)||(1971013-1971069)
chr1 (17-64)||(37665907-37665954)
chr1 (16-64)||(32152559-32152607)
[»] chr8 (2 HSPs)
chr8 (16-58)||(10802307-10802349)
chr8 (16-57)||(29255795-29255836)
[»] chr7 (4 HSPs)
chr7 (16-58)||(22866374-22866416)
chr7 (16-64)||(42892693-42892741)
chr7 (16-51)||(27278169-27278204)
chr7 (16-58)||(47552849-47552891)
[»] chr2 (2 HSPs)
chr2 (16-64)||(33937395-33937443)
chr2 (16-64)||(22298466-22298514)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 83 - 359
Target Start/End: Complemental strand, 28199055 - 28198778
Alignment:
Q  83 ctttgctatgtttcaactatatttt---aaaaaatatctcttttattttatcaaaggttgaaatgttaattataaaagagtgaattataatgattgacaa 179  Q
    |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  28199055 ctttgctatgtttcaactatattttttaaaaaaatatctcttttattttatcaaaggttgaaatgttaattatataagagtgaattataatgattggcaa 28198956  T
Q  180 gctctttttatgttacccctttagtaagtaatgatgaagagacatttaataataataattctaatttaagggaatgttttttacaattccttaagcgcta 279  Q
     || ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28198955 actttttttatgttacccctttagtaagt-atgctgaatagacatttaataataataattctaattttagggaatgttttttacaattccttaagcgcta 28198857  T
Q  280 gaaaaatattgaattgttttagaacaacatgttctctacacactataaagtgatcaaatcatatcttacttgtatcatgc 359  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28198856 g-aaaatattgaattgttttagaacaacatgttctctacacattataaagtgatcaaatcatatcttacttgtatcatgc 28198778  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 29322383 - 29322335
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  29322383 tgtgcttgaggggctggttgtttctttaatatattttgcttagtttctt 29322335  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 343
Target Start/End: Original strand, 10703448 - 10703563
Alignment:
Q  226 taataataataattctaatttaagggaatgttttttacaattccttaagcgctagaaaaatattgaattgttttagaacaacatgttctctacacactat 325  Q
    |||| |||||||||| ||||| ||||  ||  |||||||| ||||||||| ||| |||||| |  ||||||||||  || ||||| ||| ||||||||||    
T  10703448 taattataataattcaaattttagggggtgccttttacaactccttaagcactaaaaaaatgt--aattgttttattacgacatgctctttacacactat 10703545  T
Q  326 aaagtgatcaaatcatat 343  Q
    |||||| |||||||||||    
T  10703546 aaagtgctcaaatcatat 10703563  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 25664163 - 25664217
Alignment:
Q  120 ttttattttatcaaaggttgaaatgttaattataaaagagtgaattataatgatt 174  Q
    ||||||||||||||||||||| | ||||||||||||||| | |||||||||||||    
T  25664163 ttttattttatcaaaggttgagaagttaattataaaagaataaattataatgatt 25664217  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 343
Target Start/End: Original strand, 10698896 - 10699052
Alignment:
Q  186 tttatgttacccctttagtaagtaatgatgaagagacatttaataataataattctaatttaagggaatgttttttacaattccttaagcgctagaaaaa 285  Q
    |||| |||| |||||||||||||  || | |||||||||||||| |||||||||| ||||| ||| | |  ||||||||| ||||||| || ||| || |    
T  10698896 tttacgttatccctttagtaagtg-tgtttaagagacatttaattataataattcaaattttaggtagtactttttacaactccttaaacgttaggaata 10698994  T
Q  286 tattgaattgttttagaacaacatgttctctacacactataaagtgatcaaatcatat 343  Q
    ||||  | | |||||| |||||||   |||||||||| ||||| | ||||||| ||||    
T  10698995 tatttcactattttagtacaacatacactctacacaccataaattaatcaaattatat 10699052  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 8894982 - 8894938
Alignment:
Q  20 cttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||  |||||||| ||||||||||||||||| |||||    
T  8894982 cttgaggggctatttgtttctataatatattttgcttagtttctt 8894938  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 52195883 - 52195835
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52195883 tgtgcttgaggggctggttgtttctttaatatattttgcttagcttctt 52195835  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 39633452 - 39633500
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||    
T  39633452 tgtgcttgagggactgattgtttctttaatatattttgcttagtttctt 39633500  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 53813675 - 53813629
Alignment:
Q  18 tgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||| ||| |||||||||||||||||||||||||| |||||    
T  53813675 tgcttgagggactgtttgtttctttaatatattttgcttagtttctt 53813629  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 10753677 - 10753629
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||| | | || |||||||||||||||||||||||||||||    
T  10753677 tgtgcttgagggaccggttatttctttaatatattttgcttagcttctt 10753629  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 16663577 - 16663529
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    ||||||||| |||||| |||||||| |||||||||||||||| ||||||    
T  16663577 tgtgcttgacgggctggttgtttctataatatattttgcttaacttctt 16663529  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 49238181 - 49238133
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    ||||||||||| |||| |||||||| ||||||||||||||||| |||||    
T  49238181 tgtgcttgaggagctggttgtttctataatatattttgcttagtttctt 49238133  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 30737109 - 30737061
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||  | ||||||||||||||||||||||| |||||| |||||    
T  30737109 tgtgcttgattgactgattgtttctttaatatatttcgcttagtttctt 30737061  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 17469756 - 17469804
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  17469756 tgtgcttgaggggctggttgtttctataatatattttgcttagcttctt 17469804  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 36950803 - 36950755
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||||||| | |||||||||||||||||||||||| |||||    
T  36950803 tgtgcttgaggggctggtcgtttctttaatatattttgcttagtttctt 36950755  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 50694381 - 50694429
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  50694381 tgtgcttgaggggctggttgtttctataatatattttgcttagtttctt 50694429  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 29192939 - 29192983
Alignment:
Q  20 cttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    ||||||||  || |||||||||||||||||||||||||| |||||    
T  29192939 cttgagggattgtttgtttctttaatatattttgcttagtttctt 29192983  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 34024358 - 34024310
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  34024358 tgtgcttgaggggctggttgtttctataatatattttgcttagcttctt 34024310  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 352
Target Start/End: Complemental strand, 1971069 - 1971013
Alignment:
Q  296 ttttagaacaacatgttctctacacactataaagtgatcaaatcatatcttacttgt 352  Q
    |||||| | ||||||||||||| || |||||||||||||||||||||| ||||||||    
T  1971069 ttttagcataacatgttctctataccctataaagtgatcaaatcatattttacttgt 1971013  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 37665954 - 37665907
Alignment:
Q  17 gtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    ||||||||||| ||| ||||||||||||| |||||||||||| |||||    
T  37665954 gtgcttgagggactgtttgtttctttaatgtattttgcttagtttctt 37665907  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 32152559 - 32152607
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    ||||||||||||  || || ||||||||||||||||||||||| |||||    
T  32152559 tgtgcttgagggattggttatttctttaatatattttgcttagtttctt 32152607  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 10802307 - 10802349
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttag 58  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  10802307 tgtgcttgaggggctggttgtttctttaatatattttgcttag 10802349  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 29255836 - 29255795
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgctta 57  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  29255836 tgtgcttgaggggctggttgtttctttaatatattttgctta 29255795  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 22866374 - 22866416
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttag 58  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  22866374 tgtgcttgaagggctgattgtttctttaatatattttgcttag 22866416  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 42892693 - 42892741
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  42892693 tgtgcttgaggggctgtttgtttctataatatattttgcttagtttctt 42892741  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 27278204 - 27278169
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattt 51  Q
    |||||||||||| |||||||||||||||||||||||    
T  27278204 tgtgcttgagggactgattgtttctttaatatattt 27278169  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 47552891 - 47552849
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttag 58  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||    
T  47552891 tgtgtttgaggggctggttgtttctttaatatattttgtttag 47552849  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 33937395 - 33937443
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||| ||| ||||||||||||||||||| |||||| |||||    
T  33937395 tgtgcttgagggactgtttgtttctttaatatatttcgcttagtttctt 33937443  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 22298514 - 22298466
Alignment:
Q  16 tgtgcttgaggggctgattgtttctttaatatattttgcttagcttctt 64  Q
    |||||||||||| ||| ||| ||||||||||||||| |||||| |||||    
T  22298514 tgtgcttgagggtctgcttgcttctttaatatatttcgcttagtttctt 22298466  T

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