View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_2 (Length: 729)
Name: NF3639_low_2
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_2 |
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| [»] scaffold0110 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 92 - 714
Target Start/End: Complemental strand, 31639403 - 31638781
Alignment:
| Q |
92 |
ctgattgaaccaaccacgttgaaccggttcaatttggcacatcggaccacaatgtaaagaatgcaatgccggtaatannnnnnnnattgttataagttga |
191 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31639403 |
ctgattgaaccaaccacgttgaaccgtttcaatttggcacatcggaccacaatgtaaagaatgcaatgccggtaatattttttttattgttataagttga |
31639304 |
T |
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| Q |
192 |
atatatgatgtgcttggaaccttgaaatgtagttggtaacttctataggcagcagcatgggataagagaatgttatgagcaacaatgtaaggttcagtgg |
291 |
Q |
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| T |
31639303 |
atatatgatgtgcttggaaccttgaaatgtagttggtaacttctataggcagcagcatgggataagagaatgttatgagcaacaatgtaaggttcagtgg |
31639204 |
T |
|
| Q |
292 |
acgattttcccttcttacatacaagatgaccaagaagggaacatcttcctggtgcttgaatgcctaaatcataaccatggagggcaaagttgtgaggttc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31639203 |
acgattttcccttcttacatacaagatgaccaagaagggaacatcttcctggtgcttgaatgcctaaatcataaccatggagggcaaagttgtgaggttc |
31639104 |
T |
|
| Q |
392 |
attgaaggtaatccagtgcttaactctgtctccaaaagctttgaagcatgtataggcataatgctcaaaatcttttctgtgaatatgtagagataaatat |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31639103 |
attgaaggtaatccagtgcttaactctgtctccaaaagctttgaagcatgtataggcataatgctcaaaatcttttctgtgaatatgtagagataaatat |
31639004 |
T |
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| Q |
492 |
gaagctcagaaaacaatttttctcaaaagacctcggctataaaccactgacacagaaacatggacatcaaacacgacattgacatgagaaaaccgataat |
591 |
Q |
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| T |
31639003 |
gaagctcagaaaacaatttttctcaaaagacctcggctataaaccactgacacagaaacatggacatcaaacacgacattgacatgagaaaaccgataat |
31638904 |
T |
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| Q |
592 |
aacttgagaaaatgaattaatttgaatataatcgcatatgtcggtgtcgtgttgatgtgtccgatacctagatacgcattcaatcagaaatgttgatact |
691 |
Q |
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| T |
31638903 |
aacttgagaaaatgaattaatttgaatataatcgcatatgtcggtgtcgtgttgatgtgtccgatacctagatacgcattcaatcagaaatgttgatatt |
31638804 |
T |
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| Q |
692 |
atgcatgctatataagtatatag |
714 |
Q |
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| T |
31638803 |
atgcatgctatataagtatatag |
31638781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 31639484 - 31639437
Alignment:
| Q |
11 |
cagagattgaaccggtaagaccttcatctctcggcagagtcagatgac |
58 |
Q |
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| T |
31639484 |
cagagattgaaccggtaagaccttcatctctcggcagagtcagatgac |
31639437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 586 - 640
Target Start/End: Complemental strand, 46179963 - 46179910
Alignment:
| Q |
586 |
gataataacttgagaaaatgaattaatttgaatataatcgcatatgtcggtgtcg |
640 |
Q |
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| T |
46179963 |
gataataagttgagaaaataaattaatt-gaatataatcacatgtgtcggtgtcg |
46179910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 13140 - 13091
Alignment:
| Q |
387 |
ggttcattgaaggtaatccagtgcttaactctgtctccaaaagctttgaa |
436 |
Q |
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| T |
13140 |
ggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaa |
13091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 20877 - 20828
Alignment:
| Q |
387 |
ggttcattgaaggtaatccagtgcttaactctgtctccaaaagctttgaa |
436 |
Q |
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| T |
20877 |
ggttcattgaaagtcatccagttcttaactctgtctccaaatgttttgaa |
20828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 583 - 632
Target Start/End: Original strand, 34625737 - 34625785
Alignment:
| Q |
583 |
accgataataacttgagaaaatgaattaatttgaatataatcgcatatgt |
632 |
Q |
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| T |
34625737 |
accgataataatttgagaaaatgaattaa-ttgaatgtaatcacatatgt |
34625785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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