View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_21 (Length: 371)
Name: NF3639_low_21
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 23 - 355
Target Start/End: Complemental strand, 40050954 - 40050622
Alignment:
| Q |
23 |
gccccaacagatattatccgaatcctcaaaaaagccggcggattcaccacccttatccgcctcctccaaaccactcaagtagccacacaaatcaatgcac |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40050954 |
gccccaacagatattatccgaatcctcaaaaaagccggtggattcaccacccttatccgcctcctccaaaccactcaagtagccacacaaatcaatgcac |
40050855 |
T |
|
| Q |
123 |
aactcctaaactcaaacaatggattaacactctttgcaccaaatgacaattccttttcaaccctcaaacctggttttctcaattcccttaatgatcaaca |
222 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40050854 |
aactcctaaactcaaacaatggactaacactctttgcaccaaatgacaattccttttcaaccctcaaacctggttttctcaattcccttaatgatcaaca |
40050755 |
T |
|
| Q |
223 |
aaagaatgagcttattcaattccatgaactaccctcatttgttgcactctcaaattttgatactttaagcaacccagttagaacacaagctggtgatgat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40050754 |
aaagaatgagcttattcaattccatgaactaccctcatttgttgcactctcaaattttgatactttaagcaacccagttagaacacaagctggtgatgat |
40050655 |
T |
|
| Q |
323 |
cctgagagattagcattgaatataacaagttca |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
40050654 |
cctgagagattagcattgaatataacaagttca |
40050622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 23 - 355
Target Start/End: Original strand, 22034742 - 22035074
Alignment:
| Q |
23 |
gccccaacagatattatccgaatcctcaaaaaagccggcggattcaccacccttatccgcctcctccaaaccactcaagtagccacacaaatcaatgcac |
122 |
Q |
| |
|
|||||||| || |||||| ||||||||||||| || || || |||||||| || ||||| || ||||||||||| ||||| |||| |||||||| | | |
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| T |
22034742 |
gccccaaccgacattatcagaatcctcaaaaaggctggagggttcaccacgctaatccgtcttctccaaaccacacaagtgtccacccaaatcaactctc |
22034841 |
T |
|
| Q |
123 |
aactcctaaactcaaacaatggattaacactctttgcaccaaatgacaattccttttcaaccctcaaacctggttttctcaattcccttaatgatcaaca |
222 |
Q |
| |
|
||||| ||||||| ||| ||| ||||| | ||||||||||| |||||||||||||||| |||||||| || || |||||||| |||| ||| |||| |
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|
| T |
22034842 |
aactcttaaactcgaacggtggtttaaccttgtttgcaccaaacgacaattccttttcaagtctcaaacccggcttcctcaattcgcttagcgatgaaca |
22034941 |
T |
|
| Q |
223 |
aaagaatgagcttattcaattccatgaactaccctcatttgttgcactctcaaattttgatactttaagcaacccagttagaacacaagctggtgatgat |
322 |
Q |
| |
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|||||| |||| || |||||||| ||||| ||||||| | | ||||||||||||||||| |||||||| || |||||||| ||||||||||| |
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| T |
22034942 |
aaagaacaagctcatccaattccacttgctacctacatttgtatccatgtcaaattttgatactttgagcaacccggtgagaacacaggctggtgatgac |
22035041 |
T |
|
| Q |
323 |
cctgagagattagcattgaatataacaagttca |
355 |
Q |
| |
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||| | || || | | ||||| ||||||||||| |
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|
| T |
22035042 |
ccttataggttgggactgaatgtaacaagttca |
22035074 |
T |
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