View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_22 (Length: 370)
Name: NF3639_low_22
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 24181793 - 24182142
Alignment:
| Q |
15 |
aaattctgcaatgagattggtgtttctagaggagttttcaaagtttggatgcataacaacaagaataatagcttgaggaagaaatcagaatctgatgttg |
114 |
Q |
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| T |
24181793 |
aaattctgcaatgagattggtgtttctagaggagttttcaaagtttggatgcataacaacaagaataatagcttgaggaagaaatcagaatctgatgttg |
24181892 |
T |
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| Q |
115 |
gaattggaattgctactcaaattgctactcaaaatgatgataagaacaatgttggtaatggtaatgatgatgcttccaacaatgtcattcatcatatgaa |
214 |
Q |
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| T |
24181893 |
gaattggaattgctactcaaattgctactcaaaatgatgataagaacaatgttggtaatggtaatgatgatgcttccaacaatgtcattcatcatatgaa |
24181992 |
T |
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| Q |
215 |
tgaagatcatgggtgtgtcaatgttcatgtttcttctgttaatggtttatcttcttaattaattagtcttttttaattatttttcaaggaattaagataa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
24181993 |
tgaagatcatgggtgtgtcaatgttcatgtttcttctgttaatggtttatcttcttaattaattagtc-tttttaattatttttcaaggaactaagataa |
24182091 |
T |
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| Q |
315 |
atgggaattaagcttaatctagtagagattttatttttaccatgatctgtg |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24182092 |
atgggaattaagcttaatctagtagagattttatttttaccatgatctgtg |
24182142 |
T |
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