View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_23 (Length: 367)
Name: NF3639_low_23
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 44227761 - 44227977
Alignment:
| Q |
14 |
tgagatgaaagataaaaaatcttcaaaatcaaagggtgaaactgaaaatattattaataaggagatcaaggaagatcagaagaatagtactgaacaaatt |
113 |
Q |
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| T |
44227761 |
tgagaagaaagataaaaaatcttcaaaatcaaagggtgaaactgaaaatattattaataaggagatcaaggaagatcagaagaatagtactgaacatatt |
44227860 |
T |
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| Q |
114 |
ggtgaaagtagtcatgaaggttgcatagatgatgcaggtgatgatggtgaagaagattcagatcacaaagaaggtaataatggtgataaaaataataaca |
213 |
Q |
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| T |
44227861 |
ggtgaaagtagtcatgaaggttgcatagatgatgcaggtgatgatggtgaagaagattcagatcacaaagaaggtaataatggtgataaaaataataaca |
44227960 |
T |
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| Q |
214 |
aaagtgagggtggtgct |
230 |
Q |
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| T |
44227961 |
aaagtgagggtggtgct |
44227977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 266 - 349
Target Start/End: Original strand, 44228013 - 44228096
Alignment:
| Q |
266 |
tggttctgcttcattaactccaaataatggaggaggaaaagaaatcattagtacagaaacaattgattcaccacaagtacttga |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44228013 |
tggttctgcttcattaactccaaataatggaggaggaaaagaaataattagtacagaaacaattgattcaccacaagtacttga |
44228096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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