View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_24 (Length: 362)
Name: NF3639_low_24
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 53499677 - 53499329
Alignment:
| Q |
1 |
aaagaatgatcgtgaggcaatgagttatgagagtcctatagtatatgagactaagagtgagtgcattcaactggaaggccttgtggaaatctcttcttat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499677 |
aaagaatgatcgtgaggcaatgagttatgagagtcctatagtatatgagactaagagtgagtgcattcaactggaaggccttgtggaaatctcttcttat |
53499578 |
T |
|
| Q |
101 |
ctgagcagtaattataaatcatatagttcttctgcacccacctcagcctctgctgaccagttgagtcaagctgttgtgatagccatgatgcagaggaagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499577 |
ctgagcagtaattataaatcatatagttcttctgcacccacctcagcctctgctgaccagttgagtcaagctgttgtgatagccatgatgcagaggaagc |
53499478 |
T |
|
| Q |
201 |
agagggttttgatgatgatttgcatgatgattttccaccgttccatatacaagcattgttggcattgaagtttctgtaagaagcagtgaaaggagctttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499477 |
agagggttttgatgatgatttgcatgatgattttccaccgttccatatacaagcattgttggcattgaagtttctgtaagaagcagtgaaaggagctttg |
53499378 |
T |
|
| Q |
301 |
gaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcat |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53499377 |
gaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcat |
53499329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 53493124 - 53493037
Alignment:
| Q |
262 |
gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcat |
349 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53493124 |
gcattgaagtgtctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcat |
53493037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 53495510 - 53495423
Alignment:
| Q |
262 |
gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcat |
349 |
Q |
| |
|
|||||||| || || || || |||||||| ||||| || | |||||||||||| ||||| || ||||||||||||||||||||||||| |
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| T |
53495510 |
gcattgaaattcctatatgatgcagtgaatggagcatttgtccaatctgtcttgacaagaccacctcttgttgcccaatcatcagcat |
53495423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 338
Target Start/End: Complemental strand, 53502538 - 53502462
Alignment:
| Q |
262 |
gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgccca |
338 |
Q |
| |
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||||| || |||||||| ||||| ||||| ||||| || | |||||||||||| || ||||| |||||||||||||| |
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|
| T |
53502538 |
gcattaaaatttctgtaggaagctgtgaatggagcctttgtccaatctgtcttgactagtccacctcttgttgccca |
53502462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 349
Target Start/End: Original strand, 53488628 - 53488718
Alignment:
| Q |
259 |
ttggcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcat |
349 |
Q |
| |
|
||||| |||||||| || |||||||||| || ||||||| ||||||||| || ||||| || |||||||||||||||||||| |||| |
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| T |
53488628 |
ttggctttgaagttcctaaaagaagcagtaaatggagcttgattccaatctgttttcacaagaccacctcttgttgcccaatcatcggcat |
53488718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 262 - 349
Target Start/End: Complemental strand, 37189050 - 37188963
Alignment:
| Q |
262 |
gcattgaagtttctgtaagaagcagtgaaaggagctttggaccaatctgtcttaacaagtcctcctcttgttgcccaatcatcagcat |
349 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
37189050 |
gcattgaagtttctataagaagcagtaaaaggagcattggaccaatctgtcttaacaagtccacctcttgtagcccaatcatcagcat |
37188963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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