View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_26 (Length: 339)
Name: NF3639_low_26
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 93 - 324
Target Start/End: Original strand, 9517560 - 9517794
Alignment:
| Q |
93 |
attagatactataaccaacattacatgtaattttcatatatatttaggtctccaagtttaaattttggaacattttgtgaagctcttacatgtaaccaac |
192 |
Q |
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| T |
9517560 |
attagatactgtaaccaacattacatgtaattttcatatatatttaggtctccaagtttaaattttggaacattttgtgaagctcttacatgtaaccaac |
9517659 |
T |
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| Q |
193 |
attacatgtaattgttcgctgtaaatagcacagctcttaaaatattgtcatggtgttggtttattatgagggtgaagatgac---tttagaatcagttgg |
289 |
Q |
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| T |
9517660 |
attacatgtaattgttcgctgtaaatagcacagctcttaaaatattgtcatggtgttggtttattatgagggtgaagatgactaatttagaatcagttgg |
9517759 |
T |
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| Q |
290 |
ttgtactcaaataggatagtcttttgtctgtatat |
324 |
Q |
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| T |
9517760 |
ttgtactcaaataggatagtcttttgtctttatat |
9517794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9517128 - 9517195
Alignment:
| Q |
1 |
caccattaaataccgcaattagatattccttgataaaaacaaggtaacaacactaaattaaaatctct |
68 |
Q |
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| T |
9517128 |
caccattaaataccgcaattagatattccttgataaaaacaaggtaacaacactaaattaaaatctct |
9517195 |
T |
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