View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_27 (Length: 329)
Name: NF3639_low_27
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 27513349 - 27513644
Alignment:
| Q |
9 |
gagatgaaaacaatgagatgcggttcaagatgaaatcaaactttttcgaatcactaatcaaaacggattagtgtttttgaatcggatggtttctgtaatt |
108 |
Q |
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| T |
27513349 |
gagatgaaaacgatgagatgcggttcaagatgaaatcaaactttttcgaa------------acggattagtgtttttgaatcggatggtttctgtaatt |
27513436 |
T |
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| Q |
109 |
gaacctttaagactcaatgattgagattgaggagaatcagaaggcttagggtgagaatctgaaatcgttaatgttgaaagaaggttagaggatcgttaat |
208 |
Q |
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| T |
27513437 |
gaacctttaagactcaatggt------------gaatcagaaggcttagggtgagaatctgaaatctttaatggtgaaagaaggttagtggatcgttaat |
27513524 |
T |
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| Q |
209 |
catcatgctctggaatttgtaacatatcatagtttatttttgtcttcaaaatcctaatttaaacctcacattataacaaatgattataccaataaccaaa |
308 |
Q |
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| T |
27513525 |
catcatgctctggaattagcagcatatcatagttgatttttctcttcaaaatcctaattcaaacctcacattataacaaatgactataccaataaccaaa |
27513624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 231 - 328
Target Start/End: Complemental strand, 8675345 - 8675247
Alignment:
| Q |
231 |
catatcatagtttattttt-gtcttcaaaatcctaatttaaacctcacattataacaaatgattataccaataaccaaaatatatattctacactcaca |
328 |
Q |
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| T |
8675345 |
catatcatagtttattttttgttttcaaaatcctaattataatctcacagtataacaaatgattataacaataaacaaaatatatattctacactcaca |
8675247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 24036304 - 24036578
Alignment:
| Q |
9 |
gagatgaaaacaatgagatgcggttcaagatgaaatcaaactttt-tcgaatcactaatcaaaacggattagtgtttttgaatcggatggtttctgtaat |
107 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| ||| |
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| T |
24036304 |
gagatgaaaactatgagatgcggttcaagatgaaatcaaacttttttcgaatcactaatcaaaactgattagtgtttttgaatcagaaagtttctgaaat |
24036403 |
T |
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| Q |
108 |
tgaacctttaagactcaatgattgagattgaggagaatcagaaggcttagggtgagaatctgaaatcgttaatgttgaaagaaggttagaggatcgttaa |
207 |
Q |
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||||||||||||||||||| ||| ||||||||||| |||||| || |||||||||||||||||||||| |||| || |||| | | |||||||| |
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| T |
24036404 |
tgaacctttaagactcaat------gatggaggagaatcaacaggctt-ggatgagaatctgaaatcgttaatggtgaaggatggtttgtgaatcgttaa |
24036496 |
T |
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| Q |
208 |
tcatcatgctctggaatttgtaacatatcatagttta-tttttgtcttcaaaatcctaatttaaacctcacattataacaaa |
288 |
Q |
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| T |
24036497 |
tcatcaggctctggaattaacatcatatcatagtttattttttctcttcaaaatcctaattcaaatctcacagtataacaaa |
24036578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 24036763 - 24036809
Alignment:
| Q |
280 |
tataacaaatgattataccaataaccaaaatatatattctacactca |
326 |
Q |
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| T |
24036763 |
tataacaaatgattataccaataaccaaaatatatattctacactca |
24036809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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