View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3639_low_28 (Length: 328)

Name: NF3639_low_28
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3639_low_28
NF3639_low_28
[»] chr2 (22 HSPs)
chr2 (53-315)||(10371218-10371481)
chr2 (11-240)||(10347213-10347442)
chr2 (53-240)||(10335209-10335397)
chr2 (48-202)||(9061678-9061828)
chr2 (20-111)||(11987957-11988048)
chr2 (20-98)||(12019356-12019434)
chr2 (20-175)||(10352622-10352770)
chr2 (23-111)||(9066106-9066194)
chr2 (20-150)||(9315554-9315679)
chr2 (28-127)||(9320528-9320623)
chr2 (48-150)||(9274099-9274197)
chr2 (20-150)||(9291473-9291598)
chr2 (92-204)||(7116557-7116668)
chr2 (131-240)||(9272148-9272263)
chr2 (20-98)||(12006563-12006643)
chr2 (60-111)||(10340974-10341025)
chr2 (20-150)||(8574000-8574131)
chr2 (28-87)||(9364210-9364269)
chr2 (160-194)||(9319106-9319140)
chr2 (20-62)||(12013019-12013061)
chr2 (92-164)||(9364107-9364177)
chr2 (21-74)||(10335412-10335465)
[»] chr3 (1 HSPs)
chr3 (20-240)||(37461914-37462130)
[»] chr1 (4 HSPs)
chr1 (51-102)||(29468278-29468329)
chr1 (23-82)||(29422911-29422970)
chr1 (20-102)||(29453767-29453849)
chr1 (20-76)||(29443793-29443849)
[»] scaffold0667 (1 HSPs)
scaffold0667 (160-240)||(2053-2132)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 53 - 315
Target Start/End: Complemental strand, 10371481 - 10371218
Alignment:
Q  53 ttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10371481 ttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagc 10371382  T
Q  153 ttatgactagctaaagaatttgcttaaagaaagaattttggtatgaattgttattctttttcagttattgtttcagatcttcactcct-nnnnnnnnntt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  10371381 ttatgactagctaaagaatttgcttaaagaaagaattttggtatgaattgttattctttttcagttattgtttcagatcttcactcctaaaaaaaaaatt 10371282  T
Q  252 ctgaatgttgagactattccaacctgccatgagttgagcttagaaattggcctaccatgaaatt 315  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10371281 ctgaatgttgagactattccaacttgccatgagttgagcttagaaattggcctaccatgaaatt 10371218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 10347442 - 10347213
Alignment:
Q  11 catagggtaaaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaa 110  Q
    |||||| || || |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||    
T  10347442 cataggatagagtattttctaattactttgaagtctttacctt-gtttatgtttatgtatttgacaatgtctatatgcttgcttttaaaagaaacaaaaa 10347344  T
Q  111 attgacaacagtgtatgatgtgtgttagtttaagagttgagcttatgactagctaaagaatttgctt-aaagaaagaattttggtatgaattgttattct 209  Q
     ||||||||| |||||| | ||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  10347343 gttgacaacaatgtatgctatgtgttagtttaagagttgagcttgggactagctaaagaattttcttaaaagaaagaattttggtatgaattgttattct 10347244  T
Q  210 ttttcagttattgtttcagatcttcactcct 240  Q
    |||||| ||||||||| ||| ||||||||||    
T  10347243 ttttcatttattgtttgagaccttcactcct 10347213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 53 - 240
Target Start/End: Complemental strand, 10335397 - 10335209
Alignment:
Q  53 ttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagc 152  Q
    |||||||||| ||||||||||||||||||| |||||  |||||| ||||||||||||||  ||||||| |||||| | ||||||||||| |||||||| |    
T  10335397 ttgtttatgtatatgtatttgacaatgtgtctatgcc-gatttccaaagaaacaaaaaaa-gacaacaatgtatgctatgtgttagttttagagttgacc 10335300  T
Q  153 ttatgactagctaaagaatttgct---taaagaaagaattttggtatgaattgttattctttttcagttattgtttcagatcttcactcct 240  Q
    || ||||||||| |||||||||||   || |||||||||| |||||||||| ||| |||||||||| ||||||||| ||||||||||||||    
T  10335299 ttgtgactagcttaagaatttgctgcttatagaaagaattgtggtatgaatcgttgttctttttcatttattgtttgagatcttcactcct 10335209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 9061678 - 9061828
Alignment:
Q  48 tacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagt 147  Q
    ||||||||||||||| |||||    |||||||||| |||||| ||||||||||||||||||||||| | |||| |||||| | ||| |||||||| ||||    
T  9061678 tacctttgtttatgtatatgt----gacaatgtgtgtatgctggatttcaaaagaaacaaaaaattaataacattgtatgctatgttttagtttaggagt 9061773  T
Q  148 tgagcttatgactagctaaagaatttgcttaaagaaagaattttggtatgaattg 202  Q
    ||| ||| ||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  9061774 tgaccttgtgactagataaagaatttacttaaagaacgaattttggtatgaattg 9061828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 11987957 - 11988048
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaa 111  Q
    |||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||||    
T  11987957 aaggattttctaattactttgaagtctctacctttgtttatgtatatatatttgacaatgtctgtatgcttgatttcaaaagaaacaaaaaa 11988048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 12019356 - 12019434
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaa 98  Q
    ||||||| |||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  12019356 aaggattctctaattactttgaagtctctacctttgtttatgtatatgtatttgacaatgtgtgtatgcttgatttcaa 12019434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 10352770 - 10352622
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaac 119  Q
    ||||||| |||||||||||| | |||||||||||||||||||| ||||      ||||||||| ||||||| ||||||||||||||||||||  ||||||    
T  10352770 aaggattctctaattactttgacgtctttacctttgtttatgtatatg------acaatgtgtgtatgctttatttcaaaagaaacaaaaaa-agacaac 10352678  T
Q  120 agtgtatgatgtgtgttagtttaagagttgagcttatgactagctaaagaatttgc 175  Q
    | |||||| | ||||||  |||| ||||||| ||| ||| | ||||||||||||||    
T  10352677 aatgtatgctatgtgttgttttaggagttgaccttgtgagttgctaaagaatttgc 10352622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 9066106 - 9066194
Alignment:
Q  23 gattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaa 111  Q
    |||| |||||||||||| |||| | |||||||||||||||  |||||||||||||||||| ||||||||||| |||||||||| |||||    
T  9066106 gattctctaattactttgaagtttctacctttgtttatgtacatgtatttgacaatgtgtgtatgcttgattccaaaagaaactaaaaa 9066194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 9315679 - 9315554
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaac 119  Q
    |||||||  |||||||||||||| ||| ||||||||||||| | |||||    |||| ||||| | |||| ||||||||||||| |||||||||||||||    
T  9315679 aaggattccctaattactttaaattctctacctttgtttatctctatgt----gacattgtgtgtgtgctggatttcaaaagaa-caaaaaattgacaac 9315585  T
Q  120 agtgtatgatgtgtgttagtttaagagttga 150  Q
    | || ||||| |||||||||||| |||||||    
T  9315584 aatgcatgatatgtgttagtttaggagttga 9315554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 9320623 - 9320528
Alignment:
Q  28 tctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatg 127  Q
    |||||||||||| |||||| |||||||||||| || |||||    |||||||||| |||||| |||||||||||||||||||||| |||| || ||||||    
T  9320623 tctaattactttgaagtctctacctttgtttacgtatatgt----gacaatgtgtgtatgctggatttcaaaagaaacaaaaaatggacagcaatgtatg 9320528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 9274197 - 9274099
Alignment:
Q  48 tacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagt 147  Q
    ||||||||||||||| |||||    |||||||||| ||||| ||||||| ||||||  ||||||||||||||| |||||| | |||||| ||||||||||    
T  9274197 tacctttgtttatgtatatgt----gacaatgtgtgtatgcatgatttctaaagaacaaaaaaattgacaacaatgtatgctatgtgttggtttaagagt 9274102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 9291598 - 9291473
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaac 119  Q
    ||||||| |||||||||||| |||||| ||||||||||||||| ||||    ||||||||||| |||||| ||| ||||||| ||  |||||||||||||    
T  9291598 aaggattctctaattactttgaagtctctacctttgtttatgtatatg----tgacaatgtgtgtatgctggatgtcaaaag-aattaaaaattgacaac 9291504  T
Q  120 agtgtatgatgtgtgttagtttaagagttga 150  Q
    | |||||| | ||| |  |||||||||||||    
T  9291503 aatgtatgctatgtatatgtttaagagttga 9291473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 204
Target Start/End: Original strand, 7116557 - 7116668
Alignment:
Q  92 atttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagcttatgactagctaaagaatttgcttaaagaaagaatttt 191  Q
    |||||||||||||||| || ||||| ||| |||||| | |||||||| ||||||||||| ||| || ||||||| | |||||| ||||| || | |||||    
T  7116557 atttcaaaagaaacaacaa-ttgaccacaatgtatgctatgtgttagcttaagagttgaccttgtgtctagctatataatttgattaaataacgtatttt 7116655  T
Q  192 ggtatgaattgtt 204  Q
    |||||||||||||    
T  7116656 ggtatgaattgtt 7116668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 240
Target Start/End: Complemental strand, 9272263 - 9272148
Alignment:
Q  131 tgtgttagtttaagagttgagcttatgactagcta---aagaatttgcttaaagaaagaattttggtatgaattg---ttattctttttcagttattgtt 224  Q
    |||| ||||||||||||||| ||| ||||||||||   ||  |||||||||||||||||||||||| ||||||||   || || ||||| | ||||||||    
T  9272263 tgtgctagtttaagagttgaccttgtgactagctagctaaagatttgcttaaagaaagaattttggcatgaattgtattttttattttttatttattgtt 9272164  T
Q  225 tcagatcttcactcct 240  Q
    | ||||||| ||||||    
T  9272163 tgagatctttactcct 9272148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 12006563 - 12006643
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttat--gtatttgacaatgtgtatatgcttgatttcaa 98  Q
    ||||||| |||||||||||| |||||| ||||||||||||||| |||  |||||||||  ||||| |||||| ||||||||    
T  12006563 aaggattctctaattactttgaagtctctacctttgtttatgtatataagtatttgactctgtgtgtatgctggatttcaa 12006643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 10341025 - 10340974
Alignment:
Q  60 tgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaa 111  Q
    ||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  10341025 tgtttgtgtatatgacaatgtgtgtatgctttatttcaaaagaaacaaaaaa 10340974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 8574000 - 8574131
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgt------atatgcttgatttcaaaagaaacaaaaaatt 113  Q
    ||||||| |||||||||||| |||| | ||||||||||||||| ||||    |||||||||||       | |||| ||||||||||| |||||||||||    
T  8574000 aaggattctctaattactttgaagtttatacctttgtttatgtatatg----tgacaatgtgtgtgtgactgtgctggatttcaaaag-aacaaaaaatt 8574094  T
Q  114 gacaacagtgtatgatgtgtgttagtttaagagttga 150  Q
    || |||| ||||||   ||||||||||||| ||||||    
T  8574095 gagaacaatgtatgccatgtgttagtttaatagttga 8574131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 9364269 - 9364210
Alignment:
Q  28 tctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatg 87  Q
    |||||||||||| |||||| ||||||||||||||| ||||||| |||  |||||| ||||    
T  9364269 tctaattactttgaagtctatacctttgtttatgtatatgtatctgagcatgtgtgtatg 9364210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 194
Target Start/End: Complemental strand, 9319140 - 9319106
Alignment:
Q  160 tagctaaagaatttgcttaaagaaagaattttggt 194  Q
    ||||||||||||||||| |||||||||||||||||    
T  9319140 tagctaaagaatttgctgaaagaaagaattttggt 9319106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 12013019 - 12013061
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgt 62  Q
    ||||||| |||||||||||| |||||| |||||||||||||||    
T  12013019 aaggattctctaattactttgaagtctctacctttgtttatgt 12013061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 164
Target Start/End: Complemental strand, 9364177 - 9364107
Alignment:
Q  92 atttcaaaagaaacaaaaaattgacaacagtgtatgatgtgtgttagtttaagagttgagcttatgactagct 164  Q
    |||||||||||||||||| |  |||||| ||||||| | |||||  ||||||||||||| ||| |||||||||    
T  9364177 atttcaaaagaaacaaaaca--gacaactgtgtatgttatgtgtcggtttaagagttgaccttgtgactagct 9364107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 10335465 - 10335412
Alignment:
Q  21 aggattttctaattactttaaagtctttacctttgtttatgtttatgtatttga 74  Q
    |||||| |||||||||| |  |||| |||||||||||||||| |||||||||||    
T  10335465 aggattctctaattactctggagtcgttacctttgtttatgtatatgtatttga 10335412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 240
Target Start/End: Complemental strand, 37462130 - 37461914
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaagaaacaaaaaattgacaac 119  Q
    ||||||| |||||||||||| |||||| ||||||||||||||| |||||    |||||||||| |||||| |||||||||||||| ||||||||||||||    
T  37462130 aaggattctctaattactttgaagtctctacctttgtttatgtatatgt----gacaatgtgtgtatgctagatttcaaaagaaataaaaaattgacaac 37462035  T
Q  120 agtgtatgatgtgtgttagtttaagagttgagcttatgactagctaaagaatttgctt-aaagaaagaattttggtatgaattgttattctttttcagtt 218  Q
    | || ||  | ||||||||||||||| |||| ||| ||||||||||||||||| |||| ||| ||||||||||||  ||||||| | || ||||||| |     
T  37462034 aatgaattctatgtgttagtttaagaattgaccttgtgactagctaaagaattcgcttaaaaaaaagaattttggcttgaattgctgtt-tttttcattc 37461936  T
Q  219 attgtttcagatcttcactcct 240  Q
    ||||||| ||||||||||||||    
T  37461935 attgtttgagatcttcactcct 37461914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 29468278 - 29468329
Alignment:
Q  51 ctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaaga 102  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  29468278 ctttgtttatgtatatgtatttgacaatgtgtgtatgctggatttcaaaaga 29468329  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 29422970 - 29422911
Alignment:
Q  23 gattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgt 82  Q
    |||| |||||||| ||| |||||| ||||||||||||||| ||||||||||||| |||||    
T  29422970 gattctctaattattttgaagtctctacctttgtttatgtatatgtatttgacattgtgt 29422911  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 29453767 - 29453849
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgacaatgtgtatatgcttgatttcaaaaga 102  Q
    ||||||| |||||||||||| |||||| |||||  |||||||| ||| |||  |||||||||| |||||| ||||||| ||||    
T  29453767 aaggattctctaattactttgaagtctctacctaagtttatgtatatctatccgacaatgtgtgtatgctggatttcataaga 29453849  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 29443793 - 29443849
Alignment:
Q  20 aaggattttctaattactttaaagtctttacctttgtttatgtttatgtatttgaca 76  Q
    ||||||| |||||||| ||| |||||| ||||||||||||||| | |||||||||||    
T  29443793 aaggattctctaattattttgaagtctctacctttgtttatgtatgtgtatttgaca 29443849  T

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Target: scaffold0667 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 160 - 240
Target Start/End: Complemental strand, 2132 - 2053
Alignment:
Q  160 tagctaaagaatttgcttaaagaaagaattttggtatgaattgttattctttttcagttattgtttcagatcttcactcct 240  Q
    ||||||||||||||||| |||| |||||||||||||||||||| | || ||||||| | ||||||| |||| || ||||||    
T  2132 tagctaaagaatttgctgaaaggaagaattttggtatgaattgct-ttttttttcattcattgtttgagattttgactcct 2053  T

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