View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3639_low_32 (Length: 307)

Name: NF3639_low_32
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3639_low_32
NF3639_low_32
[»] chr8 (2 HSPs)
chr8 (12-291)||(16810087-16810366)
chr8 (203-253)||(36589884-36589933)
[»] scaffold0119 (2 HSPs)
scaffold0119 (153-246)||(22058-22151)
scaffold0119 (171-246)||(33152-33225)
[»] chr2 (2 HSPs)
chr2 (153-246)||(1278940-1279033)
chr2 (142-256)||(38142709-38142823)
[»] chr7 (2 HSPs)
chr7 (153-257)||(31317784-31317888)
chr7 (200-241)||(598391-598432)
[»] chr4 (3 HSPs)
chr4 (206-259)||(22245130-22245183)
chr4 (176-259)||(16970295-16970379)
chr4 (153-193)||(22244968-22245008)
[»] chr5 (2 HSPs)
chr5 (158-259)||(32358491-32358592)
chr5 (185-233)||(42851704-42851751)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 12 - 291
Target Start/End: Complemental strand, 16810366 - 16810087
Alignment:
Q  12 tagggggaaaatgaaataaaatcaagtgaaaataacaattcacagatgcaatgataaatttaagcaaatcaaaacaagaaaccttccaggctccagctac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16810366 tagggggaaaatgaaataaaatcaagtgaaaataacaattcacagatgcaatgataaatttaagcaaatcaaaacaagaaaccttccaggctccagctac 16810267  T
Q  112 ccttcctagagacaaactaaaaagaaaatctttgagtgaatacccaatttgatccctgacaattttcttgcgacccaatttaatcacggacaaaaaataa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16810266 ccttcctagagacaaactaaaaagaaaatctttgagtgaatacccaatttgatccctgacaattttcttgcgacccaatttaatcacggacaaaaaataa 16810167  T
Q  212 taccaaattagtctctgacattgtcaaattggggacaaattagtcccttctannnnnnnctttagattacttcaaaaagg 291  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  16810166 taccaaattagtctccgacattgtcaaattggggacaaattagtcccttctatttttttctttagattacttcaaaaagg 16810087  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 36589933 - 36589884
Alignment:
Q  203 aaaaaataataccaaattagtctctgacattgtcaaattggggacaaatta 253  Q
    ||||||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  36589933 aaaaaataatatcaaattagtcactgtcatt-tcaaattggggacaaatta 36589884  T

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Target: scaffold0119 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 22151 - 22058
Alignment:
Q  153 acccaatttgatccctgacaattttcttgcgacccaatttaatcacggacaaaaaataataccaaattagtctctgacattgtcaaattgggga 246  Q
    |||||||||| ||  || ||||||| ||||| |||||||||||| | ||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  22151 acccaatttggtctatgccaattttgttgcggcccaatttaatctcagacaaaaaataataccaaattagtccctgacattttcaaattcggga 22058  T

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Target: scaffold0119; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 33225 - 33152
Alignment:
Q  171 caattttcttgcgacccaatttaatcacggacaaaaaataataccaaattagtctctgacattgtcaaattgggga 246  Q
    ||||||| ||||| ||||||||| |||  ||||||||||||||||||| ||||| ||||| || ||||||| ||||    
T  33225 caattttgttgcggcccaatttactca--gacaaaaaataataccaaactagtccctgacgttttcaaattcggga 33152  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 1278940 - 1279033
Alignment:
Q  153 acccaatttgatccctgacaattttcttgcgacccaatttaatcacggacaaaaaataataccaaattagtctctgacattgtcaaattgggga 246  Q
    |||||||||| ||  || ||||||| ||||| |||||||||||| | ||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  1278940 acccaatttggtctatgccaattttgttgcggcccaatttaatctcagacaaaaaataataccaaattagtccctgacattttcaaattcggga 1279033  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 256
Target Start/End: Original strand, 38142709 - 38142823
Alignment:
Q  142 tttgagtgaatacccaatttgatccctgacaattttcttgcgacccaatttaatcacggacaaaaaataataccaaattagtctctgacattgtcaaatt 241  Q
    |||||||||| ||  |||||| ||  |||||||||||| ||||| ||||||| | |  |||||||||||||| |||| ||||   ||||||| | |||||    
T  38142709 tttgagtgaaaacataatttgttcattgacaattttctcgcgacacaatttagttatcgacaaaaaataatatcaaactagttcatgacatttttaaatt 38142808  T
Q  242 ggggacaaattagtc 256  Q
     ||||||||||||||    
T  38142809 agggacaaattagtc 38142823  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 257
Target Start/End: Original strand, 31317784 - 31317888
Alignment:
Q  153 acccaatttgatccctgacaattttcttgcgacccaatttaatcacggacaaaaaataataccaaattagtctctgacattgtcaaattggggacaaatt 252  Q
    |||||||||| ||| ||||| ||||||  || || |||||| || | ||||||||||||||||||| ||||| |||||||| | ||| ||||||||||||    
T  31317784 acccaatttggtccttgacagttttctcacggcctaatttagtccccgacaaaaaataataccaaactagtccctgacattttaaaaatggggacaaatt 31317883  T
Q  253 agtcc 257  Q
    |||||    
T  31317884 agtcc 31317888  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 598391 - 598432
Alignment:
Q  200 gacaaaaaataataccaaattagtctctgacattgtcaaatt 241  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  598391 gacaaaaaataataccaaattagtccctgacattttcaaatt 598432  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 22245183 - 22245130
Alignment:
Q  206 aaataataccaaattagtctctgacattgtcaaattggggacaaattagtccct 259  Q
    ||||||||||||||||||  ||| |||| |||||||||||||||||||||||||    
T  22245183 aaataataccaaattagttcctgccattttcaaattggggacaaattagtccct 22245130  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 259
Target Start/End: Original strand, 16970295 - 16970379
Alignment:
Q  176 ttcttgcgacccaatttaatcacggacaaaaaataatac-caaattagtctctgacattgtcaaattggggacaaattagtccct 259  Q
    |||| |||| |||||||| || | |||||||| |||||| |||| |||||  ||||||| ||| | |||||||||||||||||||    
T  16970295 ttctcgcgatccaatttagtcccagacaaaaagtaatactcaaaatagtccatgacattttcatactggggacaaattagtccct 16970379  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 22244968 - 22245008
Alignment:
Q  153 acccaatttgatccctgacaattttcttgcgacccaattta 193  Q
    |||||||||| |||||||||||||||| ||| |||||||||    
T  22244968 acccaatttggtccctgacaattttctcgcggcccaattta 22245008  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 259
Target Start/End: Original strand, 32358491 - 32358592
Alignment:
Q  158 atttgatccctgacaattttcttgcgacccaatttaatcacggacaaaaaataataccaaattagtctctgacattgtcaaattggggacaaattagtcc 257  Q
    ||||| |||| ||||||||||| ||  ||||||||  || | || | |||||||||||||| ||| |  ||||||| ||||||||||||||||| |||||    
T  32358491 atttggtcccggacaattttctcgcagcccaatttgctccctgatacaaaataataccaaactagcccttgacattttcaaattggggacaaataagtcc 32358590  T
Q  258 ct 259  Q
    ||    
T  32358591 ct 32358592  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 42851751 - 42851704
Alignment:
Q  185 cccaatttaatcacggacaaaaaataataccaaattagtctctgacatt 233  Q
    ||||||||| || ||||||| |||||||||||||| |||||||||||||    
T  42851751 cccaatttagtc-cggacaagaaataataccaaatcagtctctgacatt 42851704  T

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