View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_36 (Length: 289)
Name: NF3639_low_36
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 47075009 - 47075282
Alignment:
| Q |
1 |
atcctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttactt |
100 |
Q |
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| T |
47075009 |
atcctgcatagagaaagaaattaaaaaaatgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttactt |
47075108 |
T |
|
| Q |
101 |
tacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtcttgcaaataggaacagaacctccact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075109 |
tacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtcttgcaaataggaacagaacctccact |
47075208 |
T |
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| Q |
201 |
ctcaacaattcttgatatccttagaaaaggatcctacaagaaaaagcaagatgagttttaagaatgtaataaat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47075209 |
ctcaacaattcttgatatccttagaaaaggatcctacaagaaaaagcaagatgagttttaagaatgtaataaat |
47075282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 52 - 245
Target Start/End: Original strand, 47057258 - 47057452
Alignment:
| Q |
52 |
atatgatgtaacatcagacatgttgcaaataaagatggaaagcttactttacttccaaactgctggaaattaagacaaagtggtctccattttggattta |
151 |
Q |
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||||||| |||||| |||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
47057258 |
atatgatttaacattagacatgttgtgttcaaagatcgcaagcttactatacttccaaactgctggaaattaagacaaactggtttccattttggattta |
47057357 |
T |
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| Q |
152 |
aatt-gttgtctttaacttcagtcttgcaaataggaacagaacctccactctcaacaattcttgatatccttagaaaaggatcctacaagaaaaa |
245 |
Q |
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| T |
47057358 |
aatttgttgtctataacttcagtcttgcaaataggaacagaacctccactctcaaccattcttgatatccttagaaaaggatcctacaagaaaaa |
47057452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 18230389 - 18230146
Alignment:
| Q |
1 |
atcctgcatagagaaagaaattnnnnnnntgtcagagtaatctatatatgaatatgatgtaacatcagacatgttgcaaataaagatggaaagcttactt |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||| |||||||||||| |
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| T |
18230389 |
atcctgcatagagaaagaaattaaaaaa-tgtcagagtaatctatatatgaatatggtgtaacatcggacatgttgtgcacaaagatcgaaagcttactt |
18230291 |
T |
|
| Q |
101 |
tacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctttaacttcagtcttgcaaataggaacagaacctccact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||| |
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| T |
18230290 |
tacttccaaactgctggaaattaagacaaagtggtctccattttggatttaaattgttgtctataacttcagtcttgaaaataggaacagttcctccact |
18230191 |
T |
|
| Q |
201 |
ctcaacaattcttgatatccttagaaaaggatcctacaagaaaaa |
245 |
Q |
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|||||| | || ||||||||||||||||||||||| ||||||||| |
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| T |
18230190 |
ctcaaccactcgtgatatccttagaaaaggatcctgcaagaaaaa |
18230146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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