View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3639_low_37 (Length: 278)

Name: NF3639_low_37
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3639_low_37
NF3639_low_37
[»] chr1 (3 HSPs)
chr1 (18-277)||(30757741-30757999)
chr1 (18-277)||(30765193-30765451)
chr1 (41-114)||(52776097-52776170)
[»] chr4 (2 HSPs)
chr4 (28-275)||(25226644-25226890)
chr4 (41-114)||(22178732-22178805)
[»] chr6 (3 HSPs)
chr6 (95-237)||(26628690-26628832)
chr6 (95-237)||(26734666-26734808)
chr6 (18-87)||(20700989-20701058)
[»] chr5 (3 HSPs)
chr5 (143-225)||(15447042-15447124)
chr5 (164-227)||(9848860-9848923)
chr5 (155-236)||(23968039-23968120)
[»] chr3 (2 HSPs)
chr3 (41-114)||(19588501-19588574)
chr3 (41-114)||(12283717-12283790)
[»] chr8 (1 HSPs)
chr8 (164-227)||(18314011-18314074)
[»] chr7 (3 HSPs)
chr7 (34-109)||(15997139-15997214)
chr7 (164-227)||(8367884-8367947)
chr7 (34-109)||(14580137-14580212)
[»] scaffold0329 (1 HSPs)
scaffold0329 (41-114)||(9426-9499)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 30757741 - 30757999
Alignment:
Q  18 caaaagcattatcatgaaacaatatagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttccgaagcatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  30757741 caaaagcattatcatgaaacaatatagtttgagaaattgaatcagaaacagaattaataatccaagactataccaaatgattgcatctttccgaagcatt 30757840  T
Q  118 acggttgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgca 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  30757841 acgattgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttaacacccaaagcacgctgcattgatctactccatgca 30757940  T
Q  218 agataattggatccattgaacttaggagacacagtcaccgaattgaggtccttcactatg 277  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  30757941 agataattggatccattgaacttaggagacacaatcaccgaatt-aggtccttcactatg 30757999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 30765193 - 30765451
Alignment:
Q  18 caaaagcattatcatgaaacaatatagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttccgaagcatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||||||||||||||||||||||||||||    
T  30765193 caaaagcattatcatgaaacaatatagtttgagaaattgaatcagaaacagaattaataatccaagactataccaaatgattgcatctttccgaagcatt 30765292  T
Q  118 acggttgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgca 217  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  30765293 acgattgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttaacacccaaagcacgctgcattgatctactccatgca 30765392  T
Q  218 agataattggatccattgaacttaggagacacagtcaccgaattgaggtccttcactatg 277  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  30765393 agataattggatccattgaacttaggagacacaatcaccgaatt-aggtccttcactatg 30765451  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 52776170 - 52776097
Alignment:
Q  41 atagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttccgaagc 114  Q
    |||||||||| ||||||||||||||   ||||||| | |||||| ||||||||||| ||||||| |||| ||||    
T  52776170 atagtttgagcaattgaatcagaaactgaattaatgagccaagattgtaccaaatggttgcatcgttcccaagc 52776097  T

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Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 28 - 275
Target Start/End: Complemental strand, 25226890 - 25226644
Alignment:
Q  28 atcatgaaacaatatagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttccgaagcattacggttgagg 127  Q
    ||||||||| | |||||| |||| |||| |||||| || | |||| ||||||||||| ||||||||||| || || | |||| |||||| |||||||||     
T  25226890 atcatgaaatactatagtctgagcaattaaatcagtaacagaattgataatccaagagtgtaccaaatggttacagcgttcccaagcatgacggttgaga 25226791  T
Q  128 tcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataattgg 227  Q
    ||||| | |||||| ||| |||   |||||||||| |||||||||||||| ||||| ||||||||||||||||||||||  ||||||| |||||| ||||    
T  25226790 tcatcttcatcaggcacatgtaagtttccattgatgaagggaagcttgtttttagctcccaaagcacgctacattgatccgctccatgtaagatagttgg 25226691  T
Q  228 atccattgaacttaggagacacagtcaccgaattgaggtccttcacta 275  Q
    | || |||||| ||||||||||| ||||||| || |||||||||||||    
T  25226690 agccgttgaacataggagacacaatcaccgagtt-aggtccttcacta 25226644  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 22178732 - 22178805
Alignment:
Q  41 atagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttccgaagc 114  Q
    |||||||||| |||||||||||| |   ||||||| | |||||| ||||||||||| ||||||| |||| ||||    
T  22178732 atagtttgagcaattgaatcagagactgaattaatgagccaagattgtaccaaatggttgcatcgttcccaagc 22178805  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 26628832 - 26628690
Alignment:
Q  95 tgattgcatctttccgaagcattacggttgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcac 194  Q
    |||||||||  |||| |||| |||||||| || ||||||  |||||| || || |||||||||||||| || |||||||| ||||| ||||| |||||||    
T  26628832 tgattgcattgttcccaagcgttacggttcagatcatcaatatcaggcacgggaagagttccattgatgaaaggaagcttattcttggcacctaaagcac 26628733  T
Q  195 gctacattgatctactccatgcaagataattggatccattgaa 237  Q
    | | ||| || | ||||||||| || || || || ||||||||    
T  26628732 gttgcatagaacgactccatgcgaggtagttagaaccattgaa 26628690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 26734808 - 26734666
Alignment:
Q  95 tgattgcatctttccgaagcattacggttgaggtcatcatgatcaggtacaggtagagttccattgataaagggaagcttgttcttagcacccaaagcac 194  Q
    |||||||||  |||| |||| |||||||| || ||||||  |||||| || || |||||||||||||| || |||||||| ||||| ||||| |||||||    
T  26734808 tgattgcattgttcccaagcgttacggttcagatcatcaatatcaggcacgggaagagttccattgatgaaaggaagcttattcttggcacctaaagcac 26734709  T
Q  195 gctacattgatctactccatgcaagataattggatccattgaa 237  Q
    | | ||| || | ||||||||| || || || || ||||||||    
T  26734708 gttgcatagaacgactccatgcgaggtagttagaaccattgaa 26734666  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 20700989 - 20701058
Alignment:
Q  18 caaaagcattatcatgaaacaatatagtttgagaaattgaatcagaaatataattaataatccaagaatg 87  Q
    ||||| ||||||||||||| | |||||| |||| |||||||| |||||   |||||||| ||||||||||    
T  20700989 caaaatcattatcatgaaaaactatagtctgagcaattgaataagaaactgaattaatattccaagaatg 20701058  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 225
Target Start/End: Complemental strand, 15447124 - 15447042
Alignment:
Q  143 acaggtagagttccattgataaagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataatt 225  Q
    ||||| |||| ||||||||| || ||||| || ||||||||||| | |||||| | ||||||||| |||||||||||||||||    
T  15447124 acagggagagatccattgatgaaaggaagatttttcttagcacctagagcacgttgcattgatctgctccatgcaagataatt 15447042  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 9848860 - 9848923
Alignment:
Q  164 aagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataattgg 227  Q
    |||||||| |||||||| ||||||||||||||   ||| || | ||||||||||||||||||||    
T  9848860 aagggaagtttgttcttcgcacccaaagcacgtctcatagagcgactccatgcaagataattgg 9848923  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 23968039 - 23968120
Alignment:
Q  155 ccattgataaagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataattggatccattga 236  Q
    |||||||| || | ||| |||||||| |||||||||||||||| |||||| | |||||| || |  |||||||| |||||||    
T  23968039 ccattgatgaatgcaagtttgttctttgcacccaaagcacgcttcattgaacgactccaagctaagtaattggagccattga 23968120  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 19588501 - 19588574
Alignment:
Q  41 atagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttccgaagc 114  Q
    |||||||||| ||||||||||||||   ||||||||| |||||| ||||||||||| ||||||| |||| ||||    
T  19588501 atagtttgagcaattgaatcagaaacggaattaataagccaagattgtaccaaatggttgcatcgttcccaagc 19588574  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 12283790 - 12283717
Alignment:
Q  41 atagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttccgaagc 114  Q
    |||||||||| |||||||||| |||   ||||||| | |||||| ||||||||||| ||||||| |||| ||||    
T  12283790 atagtttgagcaattgaatcaaaaactgaattaatgagccaagattgtaccaaatggttgcatcgttcccaagc 12283717  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 18314011 - 18314074
Alignment:
Q  164 aagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataattgg 227  Q
    |||||||| |||||||| |||||||||||||||  ||| || | ||||||||||||||||||||    
T  18314011 aagggaagtttgttcttcgcacccaaagcacgcctcatagagcgactccatgcaagataattgg 18314074  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 15997214 - 15997139
Alignment:
Q  34 aaacaatatagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttcc 109  Q
    ||||| ||||||||||| ||| ||||||||||||||||| |||| |||||| || || |  |||||||||||||||    
T  15997214 aaacattatagtttgagtaatggaatcagaaatataattgataagccaagattgaacaaggtgattgcatctttcc 15997139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 227
Target Start/End: Original strand, 8367884 - 8367947
Alignment:
Q  164 aagggaagcttgttcttagcacccaaagcacgctacattgatctactccatgcaagataattgg 227  Q
    |||||||| |||||||| ||||||||||||| |  ||| || | ||||||||||||||||||||    
T  8367884 aagggaagtttgttcttcgcacccaaagcacacctcatagagcgactccatgcaagataattgg 8367947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 14580212 - 14580137
Alignment:
Q  34 aaacaatatagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttcc 109  Q
    ||||| ||||||||||| ||| |||||||||||| |||| |||| |||||| || || |  |||||||||||||||    
T  14580212 aaacactatagtttgagtaatggaatcagaaataaaattgataagccaagattgaacaaggtgattgcatctttcc 14580137  T

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Target: scaffold0329 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 9499 - 9426
Alignment:
Q  41 atagtttgagaaattgaatcagaaatataattaataatccaagaatgtaccaaatgattgcatctttccgaagc 114  Q
    |||||||||| |||||||||||| |   ||||||| | |||||| ||||||||||| ||||||| |||| ||||    
T  9499 atagtttgagcaattgaatcagagactgaattaatgagccaagattgtaccaaatggttgcatcgttcccaagc 9426  T

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