View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3639_low_4 (Length: 638)

Name: NF3639_low_4
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3639_low_4
NF3639_low_4
[»] chr4 (41 HSPs)
chr4 (341-615)||(42809245-42809520)
chr4 (348-613)||(49343029-49343295)
chr4 (344-530)||(45535974-45536161)
chr4 (344-530)||(23103011-23103198)
chr4 (131-295)||(4714139-4714305)
chr4 (130-220)||(53435661-53435751)
chr4 (129-220)||(13166677-13166768)
chr4 (95-220)||(13165581-13165703)
chr4 (63-248)||(49342673-49342856)
chr4 (63-220)||(6348209-6348362)
chr4 (94-220)||(49343917-49344040)
chr4 (130-220)||(53432180-53432270)
chr4 (129-223)||(56085464-56085558)
chr4 (63-120)||(1188897-1188954)
chr4 (57-220)||(1794459-1794621)
chr4 (63-120)||(4129047-4129104)
chr4 (56-120)||(1587229-1587293)
chr4 (60-120)||(37884282-37884342)
chr4 (129-220)||(40723344-40723435)
chr4 (63-121)||(31965889-31965947)
chr4 (63-121)||(42871149-42871207)
chr4 (60-122)||(42872302-42872364)
chr4 (63-120)||(1831268-1831325)
chr4 (63-208)||(42810123-42810265)
chr4 (147-223)||(7707725-7707801)
chr4 (147-223)||(52240013-52240089)
chr4 (63-121)||(390271-390329)
chr4 (63-121)||(2310977-2311035)
chr4 (56-118)||(24426386-24426448)
chr4 (392-462)||(34742778-34742848)
chr4 (136-186)||(36845534-36845584)
chr4 (63-120)||(393643-393700)
chr4 (63-120)||(10167479-10167536)
chr4 (127-208)||(22069350-22069431)
chr4 (128-204)||(33231505-33231582)
chr4 (63-120)||(40792805-40792862)
chr4 (304-345)||(42809183-42809224)
chr4 (147-187)||(11968647-11968687)
chr4 (130-221)||(27850844-27850938)
chr4 (63-119)||(37882888-37882944)
chr4 (56-120)||(44503684-44503747)
[»] chr1 (28 HSPs)
chr1 (341-615)||(41873380-41873655)
chr1 (56-295)||(41873803-41874040)
chr1 (364-613)||(14471281-14471531)
chr1 (63-220)||(14477699-14477853)
chr1 (362-461)||(27557265-27557364)
chr1 (63-220)||(14470910-14471064)
chr1 (63-200)||(15072718-15072852)
chr1 (63-202)||(35943373-35943509)
chr1 (294-345)||(41873676-41873727)
chr1 (63-190)||(23091405-23091530)
chr1 (84-204)||(46467221-46467338)
chr1 (63-185)||(16123341-16123460)
chr1 (129-220)||(48096940-48097031)
chr1 (129-187)||(15746707-15746765)
chr1 (56-121)||(45585013-45585078)
chr1 (167-220)||(46468627-46468680)
chr1 (63-120)||(50444703-50444760)
chr1 (63-119)||(52628879-52628935)
chr1 (130-185)||(10711906-10711961)
chr1 (61-120)||(27814344-27814403)
chr1 (145-220)||(46110414-46110489)
chr1 (128-187)||(48527650-48527709)
chr1 (144-223)||(52078049-52078128)
chr1 (129-187)||(3617438-3617496)
chr1 (130-187)||(9226156-9226213)
chr1 (145-210)||(16963966-16964031)
chr1 (60-120)||(15071393-15071453)
chr1 (144-220)||(18821647-18821723)
[»] scaffold0201 (3 HSPs)
scaffold0201 (341-614)||(21566-21839)
scaffold0201 (60-295)||(21178-21411)
scaffold0201 (295-345)||(21495-21545)
[»] chr7 (28 HSPs)
chr7 (348-613)||(4299493-4299759)
chr7 (351-596)||(22114594-22114842)
chr7 (351-596)||(40509164-40509412)
chr7 (63-209)||(40509653-40509796)
chr7 (63-220)||(40508432-40508586)
chr7 (63-209)||(22115083-22115226)
chr7 (63-248)||(4299927-4300110)
chr7 (129-220)||(3413649-3413740)
chr7 (60-223)||(32255040-32255202)
chr7 (85-220)||(4298789-4298921)
chr7 (145-223)||(47454469-47454547)
chr7 (60-120)||(6173455-6173515)
chr7 (130-223)||(11502325-11502421)
chr7 (129-175)||(33779040-33779086)
chr7 (129-187)||(46201248-46201306)
chr7 (129-222)||(47060382-47060475)
chr7 (130-187)||(2414863-2414920)
chr7 (147-220)||(40811456-40811529)
chr7 (56-121)||(45454085-45454150)
chr7 (129-175)||(15992252-15992298)
chr7 (60-118)||(32256402-32256460)
chr7 (63-121)||(33096923-33096981)
chr7 (130-220)||(35295817-35295907)
chr7 (392-462)||(43314483-43314553)
chr7 (63-121)||(43460827-43460885)
chr7 (63-121)||(47059162-47059220)
chr7 (63-119)||(30333339-30333395)
chr7 (63-119)||(45455378-45455434)
[»] chr3 (18 HSPs)
chr3 (344-454)||(44602076-44602186)
chr3 (63-188)||(53420370-53420493)
chr3 (60-185)||(3208535-3208658)
chr3 (129-220)||(42684993-42685084)
chr3 (129-223)||(10338855-10338949)
chr3 (64-122)||(12106629-12106687)
chr3 (63-120)||(18197201-18197258)
chr3 (147-223)||(38242420-38242496)
chr3 (56-116)||(40244234-40244294)
chr3 (61-120)||(38247481-38247540)
chr3 (392-462)||(21530588-21530658)
chr3 (392-462)||(35166549-35166619)
chr3 (63-155)||(40364373-40364462)
chr3 (130-187)||(48083345-48083402)
chr3 (60-223)||(53194776-53194935)
chr3 (63-120)||(53622716-53622773)
chr3 (131-187)||(10301053-10301109)
chr3 (159-231)||(27841606-27841678)
[»] chr2 (11 HSPs)
chr2 (63-185)||(43033136-43033254)
chr2 (57-187)||(43034411-43034539)
chr2 (130-220)||(34513461-34513551)
chr2 (129-204)||(34464085-34464161)
chr2 (60-120)||(28562814-28562874)
chr2 (129-208)||(34467623-34467702)
chr2 (129-231)||(29219501-29219606)
chr2 (129-231)||(29332800-29332905)
chr2 (63-121)||(11317372-11317430)
chr2 (129-175)||(30749278-30749323)
chr2 (147-187)||(11317308-11317348)
[»] chr5 (18 HSPs)
chr5 (129-220)||(33173867-33173959)
chr5 (129-220)||(1102735-1102826)
chr5 (127-202)||(22308725-22308800)
chr5 (63-220)||(325094-325247)
chr5 (60-154)||(22049111-22049201)
chr5 (63-187)||(39603907-39604030)
chr5 (63-121)||(22047786-22047844)
chr5 (130-187)||(4127194-4127251)
chr5 (60-97)||(34898979-34899016)
chr5 (130-213)||(35081352-35081435)
chr5 (130-223)||(30859075-30859171)
chr5 (261-295)||(33173791-33173825)
chr5 (66-120)||(34894206-34894260)
chr5 (63-121)||(39605473-39605531)
chr5 (130-187)||(1010306-1010363)
chr5 (130-187)||(8521372-8521429)
chr5 (60-121)||(15941324-15941385)
chr5 (180-220)||(26912251-26912291)
[»] scaffold0019 (1 HSPs)
scaffold0019 (129-220)||(63039-63130)
[»] scaffold0031 (2 HSPs)
scaffold0031 (63-187)||(124023-124143)
scaffold0031 (63-202)||(125157-125295)
[»] chr8 (14 HSPs)
chr8 (57-204)||(42872114-42872257)
chr8 (131-223)||(38696427-38696519)
chr8 (131-220)||(14840807-14840896)
chr8 (63-185)||(8571559-8571679)
chr8 (129-187)||(10669386-10669444)
chr8 (129-187)||(24192604-24192662)
chr8 (128-220)||(22551122-22551214)
chr8 (63-122)||(26696586-26696645)
chr8 (177-223)||(7486239-7486285)
chr8 (392-462)||(17594454-17594524)
chr8 (63-121)||(32798536-32798594)
chr8 (60-121)||(30787604-30787665)
chr8 (130-187)||(42877736-42877793)
chr8 (129-217)||(17455164-17455252)
[»] chr6 (7 HSPs)
chr6 (129-202)||(32506952-32507025)
chr6 (129-220)||(32505785-32505876)
chr6 (129-187)||(12669840-12669898)
chr6 (63-116)||(34024073-34024126)
chr6 (61-121)||(6452336-6452396)
chr6 (60-122)||(6452514-6452576)
chr6 (261-294)||(32506854-32506887)
[»] scaffold2071 (1 HSPs)
scaffold2071 (128-220)||(589-681)
[»] scaffold1152 (1 HSPs)
scaffold1152 (63-118)||(2483-2538)
[»] scaffold0118 (1 HSPs)
scaffold0118 (130-223)||(43478-43574)
[»] scaffold0034 (1 HSPs)
scaffold0034 (60-122)||(108564-108626)
[»] scaffold0077 (1 HSPs)
scaffold0077 (63-120)||(52646-52703)
[»] scaffold0011 (1 HSPs)
scaffold0011 (130-187)||(127551-127608)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 341 - 615
Target Start/End: Original strand, 42809245 - 42809520
Alignment:
Q  341 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgat 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  42809245 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaactaat 42809344  T
Q  441 ttcatgaaaggaacaactttt-cgtcgaccc-nnnnnnnctccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttcctgttatt 538  Q
    ||||||||||||||||||||| |||||||||        ||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  42809345 ttcatgaaaggaacaacttttccgtcgaccctttttttcctccgccgcgggaaggggcttttccggccac-catactttgtatttcttcttcctgttatt 42809443  T
Q  539 gggaattttcgaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctcc 615  Q
    ||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  42809444 gggcatttgcgaattccacttctatctctctcaaccggtgcgccacccagtacaacaaccaccaacctcctctctcc 42809520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 348 - 613
Target Start/End: Original strand, 49343029 - 49343295
Alignment:
Q  348 cggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatga 447  Q
    ||||||||| ||| | ||||  ||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||| |||||| ||    
T  49343029 cggcgtcgctctgccgaccacatgcaccgatcggaaaaagtaagaccattttctttatcctctcgacttgggctttccattggtccaactaatttcacga 49343128  T
Q  448 aaggaacaactttt-cgtcgacccnnnnnnnc-tccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttcctgttattgggaatt 545  Q
    |||||||||||||| || ||||||       | |||||||| ||||||||||||| |||||||  ||||||||||||| |||||||||||| ||||  ||    
T  49343129 aaggaacaactttttcgccgacccttttcttcctccgccgccggaaggggcttttccggccacc-atactttgtatttgttcttcctgttaatgggcttt 49343227  T
Q  546 ttcgaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctct 613  Q
    |  ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  49343228 tgtgaattccacttctttctctcttaaccggtgcgccacccagtacaacaaccaccaagctcctctct 49343295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 344 - 530
Target Start/End: Complemental strand, 45536161 - 45535974
Alignment:
Q  344 ttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttc 443  Q
    |||||||||||||  || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||     
T  45536161 ttctcggcgtcgctttgaccaccacgtgcaccgatcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaattaatttt 45536062  T
Q  444 atgaaaggaacaac-ttttcgtcgaccc-nnnnnnnctccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttc 530  Q
    | |||||||||||| |||| ||||||||        ||||||||||| ||||||||||| |||||||  ||||||||||||||||||||    
T  45536061 acgaaaggaacaactttttggtcgacccttttcttcctccgccgcggtaaggggcttttccggccac-catactttgtatttcttcttc 45535974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 344 - 530
Target Start/End: Original strand, 23103011 - 23103198
Alignment:
Q  344 ttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttc 443  Q
    |||||||||||||  || ||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||    
T  23103011 ttctcggcgtcgctttgaccaccacatgcaccgatcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaattaatttc 23103110  T
Q  444 atgaaaggaacaac-ttttcgtcgaccc-nnnnnnnctccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttc 530  Q
    | |||||||||| | |||| ||||||||        ||||||||||| ||||||||||| |||||||  ||||||||||||||||||||    
T  23103111 acgaaaggaacagctttttggtcgacccttttcttcctccgccgcggtaaggggcttttccggccac-catactttgtatttcttcttc 23103198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 131 - 295
Target Start/End: Original strand, 4714139 - 4714305
Alignment:
Q  131 ttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttga--ttttaaata 228  Q
    |||||||||||  |||||||||||| | || |||||||||||||| ||||||||||||||||||||| |||||||||||| || |||||  |||| || |    
T  4714139 ttaagtttaacttcaaatgtctatggtggatcaaccttaagagtggtccaccatagacttcattaatattttaaattttaaccatttgatctttttaaaa 4714238  T
Q  229 aaacacctaccattagatta-aatggaccatgattattttacaatgatccaacaacaactaccattgg 295  Q
    ||| | ||||||||||||||  | |||| |   |||| ||||||||||||||||||||||||||||||    
T  4714239 aaaaagctaccattagattatgaaggacta-ctttatcttacaatgatccaacaacaactaccattgg 4714305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 53435751 - 53435661
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||||||||||   ||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  53435751 gttaagtttaactttaaatgtctatggtagaccaaccttaagagtggtccaccgtagacttcattaattttttaaattttaaccgtttgat 53435661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 13166768 - 13166677
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||||||||||  |||||||||||||| |||||||| |||||||| ||||||||||| ||||||||| |||||||||||| |||||||||    
T  13166768 tgttaagtttaacttcaaatgtctatgatggaccaaccgtaagagtgatccaccatagaattcattaatattttaaattttaaccgtttgat 13166677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 95 - 220
Target Start/End: Original strand, 13165581 - 13165703
Alignment:
Q  95 ttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcatt 194  Q
    |||||| |||||||||||||||||||||   ||||   |||||||||  ||||| |||||| | ||||||||||||||||| ||||||||||||||||||    
T  13165581 ttttcctccgtttgtcaaataaatccttgactgtt---aagtttaacttcaaatttctatggtggaccaaccttaagagtggtccaccatagacttcatt 13165677  T
Q  195 aattttttaaattttagccgtttgat 220  Q
    |||| ||| ||||| | |||||||||    
T  13165678 aattattttaatttaaaccgtttgat 13165703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 49342673 - 49342856
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| |||  |||||| | ||||||| || ||||| ||||||||  |||   | |||||||||||||| |||| ||||||  | ||||    
T  49342673 aattaataaaatgtacgtttaagtccctcactttttcctccatttgttaaataaattattc---ggtgttaagtttaaccccaaacgtctatagtggacc 49342769  T
Q  163 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat-tttaaataaaacacctaccattagatta 248  Q
    |||||||| |||| ||||| ||| |||||||||||||||||||||||  ||||||||| ||| || |||  | ||||||||||||||    
T  49342770 aaccttaaaagtggtccactataaacttcattaattttttaaattttgaccgtttgatcttttaaaaaacaagctaccattagatta 49342856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 6348209 - 6348362
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| ||||||| ||| | ||||||| | ||||||||||||||| ||  | ||  ||||||||||||| |||||||||||| | ||||    
T  6348209 aattaataaaacgtaccttttggttcctcactttttcctctgtttgtcaaataaattct--gatg--gttaagtttaacctcaaatgtctatggtggacc 6348304  T
Q  163 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||||||||||| |||||| ||||| | |||||| |||  ||||||| || ||||||    
T  6348305 aaccttaagagtggtccaccgtagaccttattaatatttctaattttaaccctttgat 6348362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 49344040 - 49343917
Alignment:
Q  94 tttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcat 193  Q
    ||||||| ||||||| |||||||||| |||| ||||   ||||||||||  || | |||||| | || ||| ||||| |||  |||||||||||||||||    
T  49344040 tttttcctccgtttgccaaataaatcattcgatgtt---aagtttaaccctaagtatctatggtggatcaatcttaaaagttgtccaccatagacttcat 49343944  T
Q  194 taattttttaaattttagccgtttgat 220  Q
    ||||||||||||||||| |||||||||    
T  49343943 taattttttaaattttaaccgtttgat 49343917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 53432180 - 53432270
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||||||||||| |||||||||||| |  |||||| |||||||||   ||||||| || | ||||||||||| ||||||| |||||||||    
T  53432180 gttaagtttaaccccaaatgtctatggtgaaccaactttaagagtggctcaccatacaccttattaattttttcaattttaaccgtttgat 53432270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 56085464 - 56085558
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    |||||| ||||||| |||||||||||| | ||| ||||||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  56085464 tgttaactttaaccccaaatgtctatggtggactaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatttt 56085558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 1188897 - 1188954
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    ||||||||||| |||||||||||||||| | ||||||| ||||||| |||||||||||    
T  1188897 aattaataaaacgtacattttggtccctcactttttcctccgtttgccaaataaatcc 1188954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 1794459 - 1794621
Alignment:
Q  57 tctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt-cgttgttgttaagtttaaccacaaatg---tct 152  Q
    ||||| |||||||||||  ||| ||||| ||||| | ||||||| | ||||||||||||||||||  ||     ||||||||||| | ||||||   | |    
T  1794459 tctcacaattaataaaatataccttttgatccctcactttttcctctgtttgtcaaataaatcctaacg-----gttaagtttaatcccaaatgatgtat 1794553  T
Q  153 atgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||| | ||||||||||||||||| |||||||||||| | ||||| ||||| ||||| | |||||||||    
T  1794554 atggtggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgat 1794621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 4129047 - 4129104
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    ||||||||||| |||||||||||||||||| ||||| | ||||||| |||||||||||    
T  4129047 aattaataaaatgtacattttggtcccttacttttttctccgtttgccaaataaatcc 4129104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 1587229 - 1587293
Alignment:
Q  56 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||||| ||||||||||| |||| ||||||||||| | ||||||| ||||||| |||||||||||    
T  1587229 gtctcacaattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatcc 1587293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 37884342 - 37884282
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||||||||||||| |||| ||||||||| ||| ||||||| ||||||| |||||||||||    
T  37884342 cataattaataaaatgtaccttttggtcctttactttttcctccgtttgccaaataaatcc 37884282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 40723344 - 40723435
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||||||||||| ||||||| |||| | ||||||||||||||||| || ||||||||    ||||||| ||||||| |||  ||||||||    
T  40723344 tgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatgttaatcgtttgat 40723435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 31965889 - 31965947
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    |||||| |||| |||||||||||||||| | ||||||| ||||||| ||||||||||||    
T  31965889 aattaagaaaatgtacattttggtccctcactttttcctccgtttgccaaataaatcct 31965947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 42871149 - 42871207
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||||    
T  42871149 aattaataaaacgtacgttttggtccctcactttttcctccgtttgccaaataaatcct 42871207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 42872364 - 42872302
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 122  Q
    |||||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||| |||||    
T  42872364 cataattaataaaatgtacgttttggtccctcactttttcctccgtttgccaaataattcctt 42872302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 1831325 - 1831268
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    ||||||||||| |||||||||||||||| | ||||||| || ||| ||||||||||||    
T  1831325 aattaataaaacgtacattttggtccctcattttttcctccatttttcaaataaatcc 1831268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 208
Target Start/End: Complemental strand, 42810265 - 42810123
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaa-ccacaaatgtctatgatagac 161  Q
    ||||||||||| |||| |||  |||||| |  |||||| ||||||| |||||||||||    ||| |||||||||||| || || ||||||||| |  ||    
T  42810265 aattaataaaacgtacttttaagtccctcacattttcctccgtttgccaaataaatcc----ttggtgttaagtttaacccccagatgtctatggtgaac 42810170  T
Q  162 caaccttaagagtgttccaccatagacttcattaattttttaaattt 208  Q
    ||| |||||||||  |||||||||||| | ||||| ||||| |||||    
T  42810169 caatcttaagagtagtccaccatagaccttattaaattttttaattt 42810123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 7707725 - 7707801
Alignment:
Q  147 atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    |||||| || ||||||||||||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  7707725 atgtctttggtagaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttt 7707801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 52240013 - 52240089
Alignment:
Q  147 atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    ||||||||| | ||||||||||||||||| |||||||||||    |||||| |||| ||||| | ||||||||||||    
T  52240013 atgtctatggtggaccaaccttaagagtggtccaccatagatcctattaatatttttaatttaaaccgtttgatttt 52240089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 390271 - 390329
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||| ||| |||||||||||| | || |||| ||||||| ||||||||||||    
T  390271 aattaataaaacgtatattttggtccctcatttcttcctccgtttgccaaataaatcct 390329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 2310977 - 2311035
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||| |||| ||||||||||| || |||||| ||| ||| ||||||||||||    
T  2310977 aattaataaaacgtacgttttggtccctcagattttcctccgattgccaaataaatcct 2311035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 24426386 - 24426448
Alignment:
Q  56 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaat 118  Q
    |||||| ||||||||||| |||| ||||||||||| | ||||||| ||||||| |||| ||||    
T  24426386 gtctcacaattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaaaaaat 24426448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 34742778 - 34742848
Alignment:
Q  392 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 462  Q
    |||||||||||| ||| |||||||||  |||||| ||||||||| |  ||||| ||||||| |||||||||    
T  34742778 accattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaacttttc 34742848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 186
Target Start/End: Original strand, 36845534 - 36845584
Alignment:
Q  136 tttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatag 186  Q
    |||||||  |||||| |||||||||||||| ||||||||| ||||||||||    
T  36845534 tttaaccctaaatgtttatgatagaccaacattaagagtggtccaccatag 36845584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 393700 - 393643
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||||||||||||||  ||||||||||| | ||||| | ||||||| |||||||||||    
T  393700 aattaataaaaagtatcttttggtccctcacttttttctccgtttgccaaataaatcc 393643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 10167479 - 10167536
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||||||||||| | |||||| |||||| |  |||||| |||||||||||||||||||    
T  10167479 aattaataaaaattgcattttagtccctcatattttcctccgtttgtcaaataaatcc 10167536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 208
Target Start/End: Original strand, 22069350 - 22069431
Alignment:
Q  127 gttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattt 208  Q
    |||||||| ||||||  |||||||||||| | ||| |||||||| |||| | |||||||||||  |||||| |||| |||||    
T  22069350 gttgttaactttaacttcaaatgtctatggtggacgaaccttaaaagtggttcaccatagactctattaatatttttaattt 22069431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 33231505 - 33231582
Alignment:
Q  128 ttgttaagtttaacca-caaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaa 204  Q
    |||||||||||||||  |||||||||||| | ||| |||||||  |||| ||||||||| |||  |||||||||||||    
T  33231505 ttgttaagtttaaccctcaaatgtctatggtggacaaaccttagaagtggtccaccataaactctattaattttttaa 33231582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 40792805 - 40792862
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||||||||||  ||||||||||||||| || |||| | ||||||| |||||||||||    
T  40792805 aattaataaaacatacattttggtccctcagatttttctccgtttgccaaataaatcc 40792862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 345
Target Start/End: Original strand, 42809183 - 42809224
Alignment:
Q  304 ttcttcttcttttcacgtgtaagctccttcttcttctccctt 345  Q
    ||||||||||||||||   |||||||||||||||||||||||    
T  42809183 ttcttcttcttttcacacataagctccttcttcttctccctt 42809224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 11968647 - 11968687
Alignment:
Q  147 atgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||||||||| ||||||||||||||||| |||| ||||||    
T  11968647 atgtctatgatggaccaaccttaagagtggtccatcataga 11968687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 27850938 - 27850844
Alignment:
Q  130 gttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatt 221  Q
    ||||||||||||| ||||||   |||||| | |||||||||||| |||| |||||||||||    ||||||| ||| ||||| | ||||||||||    
T  27850938 gttaagtttaacctcaaatgatgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattttaatttaaaccgtttgatt 27850844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 37882888 - 37882944
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatc 119  Q
    ||||||||||| |||| ||||||||||| |  |||||| ||||||| ||||||||||    
T  37882888 aattaataaaacgtaccttttggtccctcaccttttcctccgtttgccaaataaatc 37882944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 44503747 - 44503684
Alignment:
Q  56 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||||| ||||||||||  |||||||||||||||| | ||||||| | ||||| |||||||||||    
T  44503747 gtctcacaattaataaac-gtacattttggtccctcactttttcctctgtttgccaaataaatcc 44503684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 7e-97; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 341 - 615
Target Start/End: Complemental strand, 41873655 - 41873380
Alignment:
Q  341 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgat 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||| ||    
T  41873655 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccatattctttattctctcgacgagggctttccattggtccaactaat 41873556  T
Q  441 ttcatgaaaggaacaactttt-cgtcgaccc-nnnnnnnctccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttcctgttatt 538  Q
    |||||||||||||||| |||| |||||||||        ||||||||||||| ||||||||| |||||||  ||||||||||||||||||||||||||||    
T  41873555 ttcatgaaaggaacaatttttccgtcgaccctttttttcctccgccgcgggatggggcttttccggccac-catactttgtatttcttcttcctgttatt 41873457  T
Q  539 gggaattttcgaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctcc 615  Q
     || |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  41873456 aggcatttgcgaattccacttctatctctcttaaccggtgcgccatccagtacaacaaccaccaacctcctctctcc 41873380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 56 - 295
Target Start/End: Complemental strand, 41874040 - 41873803
Alignment:
Q  56 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatg 155  Q
    ||||||||||||||||||||||  |||||| || |||| |||||| ||||||  ||||||||||||| ||||||   |||||||||||||||||||||||    
T  41874040 gtctcataattaataaaaagtatcttttggccctttagcttttcctccgtttaccaaataaatccttggttgtt---aagtttaaccacaaatgtctatg 41873944  T
Q  156 atagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat-tttaaataaaacacctaccattagattaaatgga 254  Q
     | ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  41873943 gtggaccaaccttaagagtggtccaccatagacttcattaattttttaaattttaaccgtttgatctttaaataaaacacctaccattagattaaatgga 41873844  T
Q  255 ccatgattattttacaatgatccaacaacaactaccattgg 295  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  41873843 ccatgattatcttacaatgatccaacaacaactaccattgg 41873803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 364 - 613
Target Start/End: Original strand, 14471281 - 14471531
Alignment:
Q  364 accatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaactttt-c 462  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| |||||| |||||||||||||||| |    
T  14471281 accacgtgcactgatcggaaaaagtaagaccattttctttatcctctcgtctagggctttccattggtccaactaatttcacgaaaggaacaactttttc 14471380  T
Q  463 gtcgacccnnnnnnnc-tccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttcctgttattgggaattttcgaattccacttct 561  Q
    | ||||||       | |||||||||||||||||||||| |||||||  |||||||||||||||||||| ||||| ||||  |||  |||||||||||||    
T  14471381 gccgacccttttcttcctccgccgcgggaaggggcttttccggccacc-atactttgtatttcttcttcttgttaatgggcttttgtgaattccacttct 14471479  T
Q  562 atctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctct 613  Q
     ||||||||||||||||| ||||| ||||| |||| ||||||||||||||||    
T  14471480 ttctctcttaaccggtgcaccacctagtaccacaaccaccaacctcctctct 14471531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 14477853 - 14477699
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| |||  |||||| | ||||| | ||||||| ||||||||||||||| ||||   |||||||||   ||||||||||| |||| |    
T  14477853 aattaataaaacgtacgtttaagtccctcacttttttctccgtttgccaaataaatccttcgatgtt---aagtttaactctaaatgtctatggtagatc 14477757  T
Q  163 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    || |||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  14477756 aatcttaagagttgtccaccatagacttcattaattttttaaattttaaccgtttgat 14477699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 362 - 461
Target Start/End: Complemental strand, 27557364 - 27557265
Alignment:
Q  362 ccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaactttt 461  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||| |||||    
T  27557364 ccaccacgtgcaccgatcgaaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaattaatttcacgaaaggaacagctttt 27557265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 14470910 - 14471064
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| ||||  ||  |||||| | |||||||  |||||| ||||||||||||||| ||||   |||||||||| |||| ||||||  | ||||    
T  14470910 aattaataaaacgtacggttaagtccctcactttttccttcgtttgccaaataaatccttcggtgtt---aagtttaaccccaaacgtctatagtggacc 14471006  T
Q  163 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||  |||||||||    
T  14471007 aaccttaagagtggtccaccataaacttcattaattttttaaattttgaccgtttgat 14471064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 63 - 200
Target Start/End: Complemental strand, 15072852 - 15072718
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||| | ||   |||||| ||||||| |||||||||||| | ||||    
T  15072852 aattaataaaacgtacattttggtcccttattttttcctccgtttgccaaataaatccat-gt--ctgttaactttaacctcaaatgtctatggtggacc 15072756  T
Q  163 aaccttaagagtgttccaccatagacttcattaatttt 200  Q
    ||||| ||||||| |||||| ||||||  |||||||||    
T  15072755 aacctaaagagtggtccaccgtagactctattaatttt 15072718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 35943509 - 35943373
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||||||||||||| | | |||||||  |||||| |||||||||||  | | | ||||||||||||||  ||||||||||| | ||||    
T  35943509 aattaataaaacgtacattttggtcc-tcactttttccttcgtttgccaaataaatcc--cctggctgttaagtttaaccctaaatgtctatggtggacc 35943413  T
Q  163 aaccttaagagtgttccaccatagacttcattaatttttt 202  Q
    ||||||||||||| |||||||||||| | ||||| |||||    
T  35943412 aaccttaagagtgatccaccatagaccttattaaattttt 35943373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 41873727 - 41873676
Alignment:
Q  294 ggtccgctccttcttcttcttttcacgtgtaagctccttcttcttctccctt 345  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41873727 ggtccgctccttcttcttcttttcacgcgtaagctccttcttcttctccctt 41873676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 23091405 - 23091530
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| |||||||| || | ||||| | ||||||| ||||||||||| | ||   |||||||||||| | |||||||||||| | ||||    
T  23091405 aattaataaaacgtacgttttggtcactcacttttttctccgtttgccaaataaatccctagtc--tgttaagtttaatctcaaatgtctatggtggacc 23091502  T
Q  163 aaccttaagagtgttccaccatagactt 190  Q
    ||| |||| |||| ||||||||||||||    
T  23091503 aactttaaaagtggtccaccatagactt 23091530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 46467221 - 46467338
Alignment:
Q  84 ggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccacca 183  Q
    ||||||| || ||| || ||||||||||||||||||| ||| ||||   ||||||||||| ||||||||||| | ||||||| |||| |||| ||||||     
T  46467221 ggtccctcaggtttgcctccgtttgtcaaataaatccctcgctgtt---aagtttaaccataaatgtctatggtggaccaacattaaaagtgatccaccg 46467317  T
Q  184 tagacttcattaattttttaa 204  Q
    ||||  | ||||| |||||||    
T  46467318 tagatgttattaaatttttaa 46467338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 16123341 - 16123460
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    |||||||||||   || |||| |||||| | ||||||  ||||||| ||||||||||| | ||||   |||||||||| | |||||||||||| ||||||    
T  16123341 aattaataaaattcacgttttagtccctcattttttcttccgtttgccaaataaatccctggttg---ttaagtttaatctcaaatgtctatggtagacc 16123437  T
Q  163 aaccttaagagtgttccaccata 185  Q
    ||| |||| |||| |||||||||    
T  16123438 aactttaaaagtgatccaccata 16123460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 48097031 - 48096940
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||||||||||| ||||||| |||| | ||||||||||||||||| || ||||||||    ||||||| ||||||| |||  ||||||||    
T  48097031 tgttaagtttaacctcaaatgtatatggtggaccaaccttaagagtggtctaccatagatcctattaattatttaaatattaatcgtttgat 48096940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 15746765 - 15746707
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    |||||||||||||  |||||||||||| | |||||| |||||||||| |||||||||||    
T  15746765 tgttaagtttaacttcaaatgtctatggtggaccaatcttaagagtggtccaccataga 15746707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 45585078 - 45585013
Alignment:
Q  56 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    |||||| ||||||||||| |||| ||||||||| | | ||||||| ||||||| ||||||||||||    
T  45585078 gtctcacaattaataaaacgtaccttttggtccttcactttttcctccgtttgccaaataaatcct 45585013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 46468680 - 46468627
Alignment:
Q  167 ttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||||||| | ||||||||||||||||||||| | |||||||| |||||||||    
T  46468680 ttaagagtggttcaccatagacttcattaatttataaaattttaaccgtttgat 46468627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 50444760 - 50444703
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    ||||||||||| |||||||||||||||| | ||||||| ||| ||| |||||||||||    
T  50444760 aattaataaaacgtacattttggtccctcattttttcctccgattgccaaataaatcc 50444703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 52628935 - 52628879
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatc 119  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||    
T  52628935 aattaataaaacgtaccttttggtccctcattttttcctccgtttgccaaataaatc 52628879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 10711906 - 10711961
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccata 185  Q
    ||||| ||||||| ||||| |||||||||||||||||| ||||||| |||| ||||    
T  10711906 gttaactttaacctcaaatatctatgatagaccaacctaaagagtggtccatcata 10711961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 27814344 - 27814403
Alignment:
Q  61 ataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    ||||||||||||| |||| ||||||||||| | ||||||| | ||||| |||||||||||    
T  27814344 ataattaataaaacgtaccttttggtccctcattttttcctctgtttgccaaataaatcc 27814403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 46110414 - 46110489
Alignment:
Q  145 aaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||| |||||| | ||||||||||||||||| |||| | ||||| | ||||||||| | ||||||| |||||||||    
T  46110414 aaatatctatggtggaccaaccttaagagtggtccatcgtagaccttattaattttgttaattttaaccgtttgat 46110489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 48527650 - 48527709
Alignment:
Q  128 ttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||||| ||||||  |||||||||||| | ||||||| ||||||||| |||||||||||    
T  48527650 ttgttaactttaactccaaatgtctatggtcgaccaactttaagagtggtccaccataga 48527709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 52078128 - 52078049
Alignment:
Q  144 caaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    |||||||||||| |  |||||||||||||||| | |||||||||    ||||||| ||| ||||||| ||||||||||||    
T  52078128 caaatgtctatggtgaaccaaccttaagagtgatacaccatagatcctattaattattttaattttaaccgtttgatttt 52078049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 3617496 - 3617438
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    |||||| ||||||| |||||||||||| |  |||||||||||||||| ||||| |||||    
T  3617496 tgttaactttaacctcaaatgtctatggtgaaccaaccttaagagtggtccactataga 3617438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 9226213 - 9226156
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||| ||||||| |||||||||||| | || ||||||||| |||| |||||||||||    
T  9226213 gttaaatttaacctcaaatgtctatggtggatcaaccttaaaagtggtccaccataga 9226156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 16963966 - 16964031
Alignment:
Q  145 aaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaatttta 210  Q
    |||||| |||||| |||||||||||| |||| |||| ||||||| | ||||||||| | |||||||    
T  16963966 aaatgtttatgatggaccaaccttaaaagtggtccatcatagaccttattaattttgttaatttta 16964031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 15071393 - 15071453
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||||||||||||| |||  ||||||||||| | ||||||| ||||||  |||||||||||    
T  15071393 cataattaataaaacgtatgttttggtccctcactttttcctccgtttaccaaataaatcc 15071453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 18821723 - 18821647
Alignment:
Q  144 caaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||||||||| | ||| ||||||||||||| || |||| |||    |||||||||||||| |||| |||||||||    
T  18821723 caaatgtctatggtggactaaccttaagagtggtctaccaaagatcctattaattttttaaaatttaaccgtttgat 18821647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 341 - 614
Target Start/End: Original strand, 21566 - 21839
Alignment:
Q  341 cccttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgat 440  Q
    |||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  21566 cccttctcggcgtttcactgtccaccatgtgccacgttcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaactaat 21665  T
Q  441 ttcatgaaaggaacaacttttc-gtcgacccnnnnnnnc-tccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttcctgttatt 538  Q
    |||||||||||||||| ||||| ||||||||       | |||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||    
T  21666 ttcatgaaaggaacaatttttccgtcgaccctttttttcctccgccgcgggaaggggcttttccggccacc-atactttgtatttcttcttcctgttatt 21764  T
Q  539 gggaattttcgaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctctc 614  Q
    || | || | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21765 ggcatttgt-gaattccacttctatctctcttaaccggtgcgccacccagtacaacaaccaccaacctcctctctc 21839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 60 - 295
Target Start/End: Original strand, 21178 - 21411
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatag 159  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||||| |||||||   ||||||||||||||||||||||||| | |    
T  21178 cataattaataaaaagtaccttttgatcccttagtttttcctccgtttgccaaataaatcattcgttg---ttaagtttaaccacaaatgtctatggtgg 21274  T
Q  160 accaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat-tttaaataaaacacctaccattagattaaatggaccat 258  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  21275 accaaccttcagagtggtccaccatagacttcattaattttttaaattttaaccgtttgatctttaaataaaacacccaccattagattaaatggaccat 21374  T
Q  259 gattattttacaatgatccaacaacaactaccattgg 295  Q
    |||||| ||||||||||||||||||||||||||||||    
T  21375 gattatcttacaatgatccaacaacaactaccattgg 21411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 295 - 345
Target Start/End: Original strand, 21495 - 21545
Alignment:
Q  295 gtccgctccttcttcttcttttcacgtgtaagctccttcttcttctccctt 345  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  21495 gtccgctcctttttcttcttttcacgcgtaagctccttcttcttctccctt 21545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 348 - 613
Target Start/End: Complemental strand, 4299759 - 4299493
Alignment:
Q  348 cggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatga 447  Q
    ||||||||| ||| | |||| |||||||| |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| ||    
T  4299759 cggcgtcgctctgccgaccacgtgcaccgatcggaataagtaagaccattttctttatcctctcgactagggctttccattggtccaactaatttcacga 4299660  T
Q  448 aaggaacaactttt-cgtcgacccnnnnnnnc-tccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttcctgttattgggaatt 545  Q
    |||||||||||||| || | ||||       | |||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||| ||||  ||    
T  4299659 aaggaacaactttttcgccaacccttttcttcctccgccgccggaaggggcttttccggccacc-atactttgtatttcttcttcctgttaatgggcttt 4299561  T
Q  546 ttcgaattccacttctatctctcttaaccggtgcgccacccagtacaacaatcaccaacctcctctct 613  Q
    |  ||||||||||||| ||||| ||||||||||||||||||||||| |||| ||||||||||||||||    
T  4299560 tgtgaattccacttctttctcttttaaccggtgcgccacccagtaccacaaccaccaacctcctctct 4299493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 351 - 596
Target Start/End: Complemental strand, 22114842 - 22114594
Alignment:
Q  351 cgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaag 450  Q
    |||||| ||| | |||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||| |||||    
T  22114842 cgtcgctctgccgaccacgtgcaccgatcggaaaaaataagaccattttctttatcctctcgactagggttttccattggtccaactaatttcacgaaag 22114743  T
Q  451 gaacaac-ttttcgtcgacc-cnnnnnnnctccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttcctgttattgggaattttc 548  Q
    ||||||| |||| | |||||         ||||||| ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||  ||| |    
T  22114742 gaacaactttttagccgacctttttcttcctccgccacgggaaggggcttttccggccac-catactttgtatttcttcttcctgttaatggg-ttttac 22114645  T
Q  549 gaattccacttctatctctcttaaccggtgc---gccacccagtacaacaa 596  Q
    ||||||||||||| |||||||||||| ||||   |||||||||||| ||||    
T  22114644 gaattccacttctttctctcttaaccagtgcaaagccacccagtaccacaa 22114594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 351 - 596
Target Start/End: Complemental strand, 40509412 - 40509164
Alignment:
Q  351 cgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaag 450  Q
    |||||| ||| | |||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||| |||||    
T  40509412 cgtcgctctgccgaccacgtgcaccgatcggaaaaaataagaccattttctttatcctctcgactagggttttccattggtccaactaatttcacgaaag 40509313  T
Q  451 gaacaac-ttttcgtcgacc-cnnnnnnnctccgccgcgggaaggggctttttcggccacatatactttgtatttcttcttcctgttattgggaattttc 548  Q
    ||||||| |||| | |||||         ||||||| ||||||||||||||| |||||||  |||||||||||||||||||||||||| ||||  ||| |    
T  40509312 gaacaactttttagccgacctttttcttcctccgccacgggaaggggcttttccggccac-catactttgtatttcttcttcctgttaatggg-ttttac 40509215  T
Q  549 gaattccacttctatctctcttaaccggtgc---gccacccagtacaacaa 596  Q
    ||||||||||||| |||||||||||| ||||   |||||||||||| ||||    
T  40509214 gaattccacttctttctctcttaaccagtgcaaagccacccagtaccacaa 40509164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 40509796 - 40509653
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| |||  || ||| | ||||||| ||||||  |||||||||| |||| ||||   |||||||||| |||||||||||  | ||||    
T  40509796 aattaataaaacgtacgtttaagttcctcactttttcctccgtttaccaaataaatcattcggtgtt---aagtttaaccccaaatgtctatagtggacc 40509700  T
Q  163 aaccttaagagtgttccaccatagacttcattaattttttaaatttt 209  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  40509699 aaccttaagagtggtccaccatagacttcattaattttttaaatttt 40509653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 40508432 - 40508586
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| |||  |||||| | ||||||| ||||| | ||||||||||||||| ||||   |||||||| | |||||||||||| | || |    
T  40508432 aattaataaaacgtacgtttaagtccctcactttttcctccgttagccaaataaatccttcggtgtt---aagtttaatcccaaatgtctatggtggatc 40508528  T
Q  163 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    || |||||||||  ||||||||||| |||||||||||||||||||||| |||||||||    
T  40508529 aatcttaagagttgtccaccatagatttcattaattttttaaattttaaccgtttgat 40508586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 22115226 - 22115083
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| |||  || ||| | ||||||| |||||   |||||||||| |||| ||||   |||||||||| |||||||||||  | ||||    
T  22115226 aattaataaaacgtacgtttaagttcctcactttttcctccgttnaccaaataaatcnttcggtgtt---aagtttaaccccaaatgtctatagtggacc 22115130  T
Q  163 aaccttaagagtgttccaccatagacttcattaattttttaaatttt 209  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  22115129 aaccttaagagtggtccaccatagacttcattaattttttaaatttt 22115083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 63 - 248
Target Start/End: Complemental strand, 4300110 - 4299927
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| |||  |||||| | ||||||| | ||||| |||||||||| |||| ||||   |||||||||| |||| ||||||  | || |    
T  4300110 aattaataaaacgtacgtttaagtccctcactttttcctctgtttgccaaataaatctttcggtgtt---aagtttaaccccaaacgtctatagtggatc 4300014  T
Q  163 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat-tttaaataaaacacctaccattagatta 248  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||  ||||||||| ||| || |||  | ||||||||||||||    
T  4300013 aaccttaagagtggcccaccatagacttcattaattttttaaattttgaccgtttgatcttttaaaaaacaagctaccattagatta 4299927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 3413649 - 3413740
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||||||||||  || ||||||||| | || ||| |||||||||  |||||||||||||||||||||||||||||||||| |||||||||    
T  3413649 tgttaagtttaacttcagatgtctatggtggatcaatcttaagagttgtccaccatagacttcattaattttttaaattttaaccgtttgat 3413740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 32255040 - 32255202
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaa---atgtctatga 156  Q
    |||||||||||||| |||||||||| ||||| | ||||||| ||||||| |||||||||||  ||  |  ||||||||||||| |||   |||| ||||     
T  32255040 cataattaataaaacgtacattttgatccctcactttttcctccgtttgccaaataaatcc--cgacg--gttaagtttaaccccaaatgatgtttatgg 32255135  T
Q  157 tagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    | ||||||||||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  32255136 tggaccaaccttaagagtggtccaccatagatcctattaattattttaatttcaaccgtttgatttt 32255202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 4298789 - 4298921
Alignment:
Q  85 gtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccat 184  Q
    |||||| | ||||||| | ||||| |||||||||| ||   || ||||||||||||||  ||| || |||| | || ||| | |||||||  ||||||||    
T  4298789 gtccctcactttttcctctgtttgccaaataaatcatt---tgatgttaagtttaaccctaaacgtgtatggtggatcaatcctaagagttgtccaccat 4298885  T
Q  185 agacttcattaattttttaaattttagccgtttgat 220  Q
    |||||||||||||||||||||||||| |||||||||    
T  4298886 agacttcattaattttttaaattttaaccgtttgat 4298921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 47454469 - 47454547
Alignment:
Q  145 aaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    ||||||||||| ||||||||||||||||||| |||| | ||||| | ||||||||| | ||||||| ||||||||||||    
T  47454469 aaatgtctatggtagaccaaccttaagagtggtccatcgtagaccttattaattttattaattttaaccgtttgatttt 47454547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 6173515 - 6173455
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||||||||||||| |||||||||||||||| | ||||||| ||||||| |||||||||||    
T  6173515 cataattaataaaacgtacattttggtccctcactttttcctccgtttgccaaataaatcc 6173455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 11502421 - 11502325
Alignment:
Q  130 gttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    ||||||||||||| ||||||   |||||| ||||||||||||||||||| |||||||||||    | ||||| ||| ||||| ||||||||||||||    
T  11502421 gttaagtttaacctcaaatgatgtctatggtagaccaaccttaagagtggtccaccatagatcctagtaattattttaatttcagccgtttgatttt 11502325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 33779086 - 33779040
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtg 175  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||    
T  33779086 tgttaagtttaaccacaaatgtctatggtggaccaaccttaagagtg 33779040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 46201248 - 46201306
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    |||||||||||||| |||||||||||| |  |||||||||||||||| |||||||||||    
T  46201248 tgttaagtttaaccccaaatgtctatggtgaaccaaccttaagagtggtccaccataga 46201306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 129 - 222
Target Start/End: Complemental strand, 47060475 - 47060382
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgattt 222  Q
    |||||||||||||  ||||||| |||| | |||||||||||||| |  |||||||||||| | ||||| |||||||| ||||  ||||||||||    
T  47060475 tgttaagtttaacaccaaatgtatatggtggaccaaccttaagaatagtccaccatagaccttattaaatttttaaaatttaatcgtttgattt 47060382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 2414863 - 2414920
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||| ||||||| ||||||||||| || |||||||||||| |||| |||||||||||    
T  2414863 gttaactttaaccccaaatgtctataatggaccaaccttaaaagtggtccaccataga 2414920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 147 - 220
Target Start/End: Original strand, 40811456 - 40811529
Alignment:
Q  147 atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||||||| | ||||||||||||||||| ||||||||||| |  |||||| |||| ||||| | |||||||||    
T  40811456 atgtctatggtggaccaaccttaagagtggtccaccatagattctattaatatttttaatttaaaccgtttgat 40811529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 45454085 - 45454150
Alignment:
Q  56 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||||||||||  ||| |||| |||||| | ||||||| ||||||| ||||||||||||    
T  45454085 gtctcataattaataaaacatacgttttagtccctcactttttcctccgtttgccaaataaatcct 45454150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 15992252 - 15992298
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtg 175  Q
    |||||| ||||||| |||||||||||| | |||||||||||||||||    
T  15992252 tgttaactttaacctcaaatgtctatggtggaccaaccttaagagtg 15992298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 32256460 - 32256402
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaat 118  Q
    |||||||||||||| |||| ||||||||||| | ||||||| || |||| |||||||||    
T  32256460 cataattaataaaatgtaccttttggtccctcactttttcctccatttgccaaataaat 32256402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 33096923 - 33096981
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    |||||||||||  ||| ||||||||||| | ||||||| ||||||| ||||||||||||    
T  33096923 aattaataaaacttaccttttggtccctcactttttcctccgtttgccaaataaatcct 33096981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 220
Target Start/End: Original strand, 35295817 - 35295907
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||| ||||||| ||||| ||| || | ||||||||||||||||| |||||||||||    ||||||| ||| ||||| | |||||||||    
T  35295817 gttaactttaaccccaaatatctgtggtggaccaaccttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgat 35295907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 43314553 - 43314483
Alignment:
Q  392 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 462  Q
    |||||||||||| ||| |||||||||  |||||| ||||||||| |  ||||| ||||||| |||||||||    
T  43314553 accattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaacttttc 43314483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 43460885 - 43460827
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||| ||||||||| |||||| | ||||||| || |||| ||||||||||||    
T  43460885 aattaataaaacgtacattttagtccctcactttttcctccatttgccaaataaatcct 43460827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 47059162 - 47059220
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||| |||| ||||| ||||| | ||||||| ||||||| ||||||||||||    
T  47059162 aattaataaaatgtacgttttgatccctcactttttcctccgtttgccaaataaatcct 47059220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 30333339 - 30333395
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatc 119  Q
    ||||||||||| |||  ||||||||||| | ||||| | ||||||||||||||||||    
T  30333339 aattaataaaacgtatcttttggtccctcatttttttctccgtttgtcaaataaatc 30333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 45455434 - 45455378
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatc 119  Q
    ||||||||||| |||||||||| ||||| | ||||| | ||||||| ||||||||||    
T  45455434 aattaataaaacgtacattttgatccctcacttttttctccgtttgccaaataaatc 45455378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 8e-32; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 344 - 454
Target Start/End: Original strand, 44602076 - 44602186
Alignment:
Q  344 ttctcggcgtcgcactgtccaccatgtgcaccgttcggaaaaagtaagaccattttctttatcctctcgacgaggactttccattggtccaactgatttc 443  Q
    |||||||||||||  || |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||    
T  44602076 ttctcggcgtcgctttgaccaccacgtgcaccgatcggaaaaagtaagaccattttctttatcctctcgacgagggctttccattggtccaattaatttc 44602175  T
Q  444 atgaaaggaac 454  Q
    |  ||||||||    
T  44602176 acaaaaggaac 44602186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 63 - 188
Target Start/End: Original strand, 53420370 - 53420493
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| ||||||||||| | ||||| | |||||| |||||||||||| | ||   | ||||||||||||||||||||||||| | ||||    
T  53420370 aattaataaaacgtacgttttggtccctcacttttttctccgtttatcaaataaatccctagtc--tattaagtttaaccacaaatgtctatggtggacc 53420467  T
Q  163 aaccttaagagtgttccaccatagac 188  Q
    ||| |||| |||| ||||||||||||    
T  53420468 aactttaaaagtgatccaccatagac 53420493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 3208535 - 3208658
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatg--tctatgat 157  Q
    |||||||||||||| |||| ||||| ||||||| ||||||| |||||||||||||||||||    ||   ||||||||||||| ||||||    |||| |    
T  3208535 cataattaataaaacgtacgttttgatcccttattttttcctccgtttgtcaaataaatcc----ttaccgttaagtttaaccccaaatgatattatggt 3208630  T
Q  158 agaccaaccttaagagtgttccaccata 185  Q
     ||||||||||||||||| |||||||||    
T  3208631 ggaccaaccttaagagtggtccaccata 3208658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 42684993 - 42685084
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||||||||||| |||||||||||| |  ||||| |||||||||| ||||||||| || | ||||| ||||| ||||| | |||||||||    
T  42684993 tgttaagtttaaccccaaatgtctatggtgaaccaagcttaagagtggtccaccataaaccttattaaattttttaatttaaaccgtttgat 42685084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 223
Target Start/End: Original strand, 10338855 - 10338949
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    |||||| ||||||| || |||||||| ||  |||||||||||||||| |||||||||||    ||||||| ||| ||||||| | ||||||||||    
T  10338855 tgttaactttaacctcagatgtctataatgaaccaaccttaagagtggtccaccatagatcctattaattattttaattttaactgtttgatttt 10338949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 12106629 - 12106687
Alignment:
Q  64 attaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 122  Q
    |||||||||| |||||||||||||||| | ||||| | |||||| ||||||||||||||    
T  12106629 attaataaaacgtacattttggtccctcacttttttctccgtttatcaaataaatcctt 12106687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 18197201 - 18197258
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| |||||||||||    
T  18197201 aattaataaaacgtaccttttggtccctcattttttcctccgtttgccaaataaatcc 18197258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 223
Target Start/End: Complemental strand, 38242496 - 38242420
Alignment:
Q  147 atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    ||||||||| | ||||||||||||||||| ||||||||| | |  ||||||| ||| ||||| | ||||||||||||    
T  38242496 atgtctatggtggaccaaccttaagagtggtccaccataaattctattaattattttaatttaaaccgtttgatttt 38242420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 40244234 - 40244294
Alignment:
Q  56 gtctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataa 116  Q
    |||||| ||||||||||| |||||||||||||||| |  |||||| ||||||| |||||||    
T  40244234 gtctcacaattaataaaacgtacattttggtccctcaaattttcctccgtttgccaaataa 40244294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 38247540 - 38247481
Alignment:
Q  61 ataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||| |||||||| |||||||||||| ||||||||||  ||||||||| |||| ||||||    
T  38247540 ataagtaataaaacgtacattttggttccttagttttcacaccgtttgccaaaaaaatcc 38247481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 21530588 - 21530658
Alignment:
Q  392 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 462  Q
    |||||||||||| ||| |||||||||  |||||| ||||||||| |  ||||| ||||||| |||||||||    
T  21530588 accattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaacttttc 21530658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 462
Target Start/End: Original strand, 35166549 - 35166619
Alignment:
Q  392 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 462  Q
    |||||||||||| ||| ||||| |||  |||||| ||||||||| | |||||| ||||||| |||||||||    
T  35166549 accattttctttttccactcgatgagagctttccgttggtccaattaatttcacgaaaggagcaacttttc 35166619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 40364373 - 40364462
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatg 155  Q
    ||||||||||| |||| |||  |||||| | ||||| | ||||||| ||||||||||||||   | ||||||||||||||  |||||||||||    
T  40364373 aattaataaaatgtacgtttaagtccctcatttttttctccgtttgccaaataaatccttc---ggtgttaagtttaacctaaaatgtctatg 40364462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 48083345 - 48083402
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||| |||||||||||||||||||| |  || ||||||||||||| || ||||||||    
T  48083345 gttaactttaaccacaaatgtctatggtgcactaaccttaagagtggtctaccataga 48083402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 53194935 - 53194776
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatag 159  Q
    |||||||||||||| |||| ||||||||||| | ||||||| |  |||| ||||||||||| | ||   |||||||||||||   ||||||||||| | |    
T  53194935 cataattaataaaacgtacgttttggtccctcactttttcctctatttgccaaataaatccat-gt--ctgttaagtttaactcaaaatgtctatggtgg 53194839  T
Q  160 accaacctta-agagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    ||  || ||| ||| |  ||||||||||||||||||||||||||  |||||| || |||||||||    
T  53194838 actcacattataga-tagtccaccatagacttcattaatttttt-tattttaaccatttgatttt 53194776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 53622716 - 53622773
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    |||||||||||| || |||||| |||||||| |||||| ||||||| ||| |||||||    
T  53622716 aattaataaaaaatatattttgatcccttagattttcctccgtttgccaactaaatcc 53622773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 10301053 - 10301109
Alignment:
Q  131 ttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    |||| ||||||| ||||| |||||| |  |||||||||||||||| |||||||||||    
T  10301053 ttaactttaacctcaaatatctatggtgaaccaaccttaagagtgatccaccataga 10301109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 27841678 - 27841606
Alignment:
Q  159 gaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgattttaaataaaa 231  Q
    ||||||||||||||||| |||||||||||    | ||||| ||| ||||||| | ||||||||||||| ||||    
T  27841678 gaccaaccttaagagtggtccaccatagatcctaataattattttaattttaactgtttgattttaaaaaaaa 27841606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 43033136 - 43033254
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| |||||||||||    | | |||||||||||||| |||||||||||| ||||||    
T  43033136 aattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatcc----tcgatgttaagtttaacctcaaatgtctatggtagacc 43033231  T
Q  163 aaccttaagagtgttccaccata 185  Q
    ||||||||||||| |||||||||    
T  43033232 aaccttaagagtggtccaccata 43033254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 187
Target Start/End: Complemental strand, 43034539 - 43034411
Alignment:
Q  57 tctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaac--cacaaatgtctat 154  Q
    ||||| ||||||||||| |||| ||||||||||| | ||||||| ||||||||||||||||| ||||   | |||||||||||||  | |||||||||||    
T  43034539 tctcacaattaataaaacgtaccttttggtccctcactttttcctccgtttgtcaaataaat-cttc---gctgttaagtttaacctctcaaatgtctat 43034444  T
Q  155 gatagaccaaccttaagagtgttccaccataga 187  Q
    | | || |||| ||||||||| |||||||||||    
T  43034443 ggtggatcaactttaagagtggtccaccataga 43034411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 130 - 220
Target Start/End: Complemental strand, 34513551 - 34513461
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||| |||||| ||||||| |||| | ||||||||||||||||| |||||||||||| | ||||||||||| ||||| | |||||||||    
T  34513551 gttaagcttaaccccaaatgtatatggttgaccaaccttaagagtgatccaccatagaccttattaatttttttaatttaaaccgtttgat 34513461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 34464085 - 34464161
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcatta-attttttaa 204  Q
    |||||||||||||| |||||||||||  | ||||||||||||||||| |||||||||||| | |||| |||||||||    
T  34464085 tgttaagtttaaccccaaatgtctatcgttgaccaaccttaagagtggtccaccatagaccttattagattttttaa 34464161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 28562874 - 28562814
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    ||||||||||||||  ||| ||||||||||| | ||||||| |||||||||||||||||||    
T  28562874 cataattaataaaacataccttttggtccctcactttttcctccgtttgtcaaataaatcc 28562814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 208
Target Start/End: Original strand, 34467623 - 34467702
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattt 208  Q
    |||| ||||||||  |||||||||||||| ||| ||||||||||||| ||||||||| || | ||||| ||||| |||||    
T  34467623 tgttgagtttaacttcaaatgtctatgatggacaaaccttaagagtggtccaccataaaccttattaagttttttaattt 34467702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 29219501 - 29219606
Alignment:
Q  129 tgttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgattttaa 225  Q
    |||||||||||||| ||||||   |||||| | |||||| ||||| |||| |||||||||||    ||||||| ||| ||||| | ||||||||||||||    
T  29219501 tgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaa 29219600  T
Q  226 ataaaa 231  Q
    | ||||    
T  29219601 aaaaaa 29219606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 29332800 - 29332905
Alignment:
Q  129 tgttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgattttaa 225  Q
    |||||||||||||| ||||||   |||||| | |||||| ||||| |||| |||||||||||    ||||||| ||| ||||| | ||||||||||||||    
T  29332800 tgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattttaatttcaaccgtttgattttaa 29332899  T
Q  226 ataaaa 231  Q
    | ||||    
T  29332900 aaaaaa 29332905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 11317430 - 11317372
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    |||||||||||  || |||||||||||| | ||||||| ||||||| ||||||||||||    
T  11317430 aattaataaaacatatattttggtccctcaatttttcctccgtttggcaaataaatcct 11317372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 30749323 - 30749278
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtg 175  Q
    |||||||||||||| |||||||||||| || ||||||||||||||||    
T  30749323 tgttaagtttaacctcaaatgtctatggta-accaaccttaagagtg 30749278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 11317348 - 11317308
Alignment:
Q  147 atgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||||||| ||||||||||||||||||| || ||||||||    
T  11317348 atgtctatggtagaccaaccttaagagtggtctaccataga 11317308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 33173959 - 33173867
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaatt-ttttaaattttagccgtttgat 220  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||    
T  33173959 tgttaagtttaaccccaaatgtctatggtggaccaaccttaagagtggtctaccatagacttcattaatttttttaaattttaaccgtttgat 33173867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 1102735 - 1102826
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||  | ||||||| ||| ||||| | |||||||||    
T  1102735 tgttaactttaaccccaaatgtctatggtagaccaaccttaagagtggtccaccatagatcttattaattattttaatttaaaccgtttgat 1102826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 22308800 - 22308725
Alignment:
Q  127 gttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaatttttt 202  Q
    |||||||||||||||| |||||||||||| | |||| |||||||||||| |||||||||||| | ||||| |||||    
T  22308800 gttgttaagtttaaccccaaatgtctatggtggacctaccttaagagtggtccaccatagacattattaaattttt 22308725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 325247 - 325094
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| ||||||||||| |  |||||| ||||||| |||||||||||  ||    |||||| ||||||   ||||||||||| | ||||    
T  325247 aattaataaaacgtaccttttggtccctcaagttttcctccgtttgccaaataaatcc--cgac--tgttaactttaactctaaatgtctatggtggacc 325152  T
Q  163 aaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||||| |||| |||| | ||||| | ||||||||| | ||||||| |||||||||    
T  325151 aaccttaatagtggtccatcgtagaccttattaattttgttaattttaaccgtttgat 325094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 22049201 - 22049111
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctat 154  Q
    |||||||||||||| |||| ||||||||||| | ||||||| | ||||| |||||||||||     || |||||||||||||| |||||||||||    
T  22049201 cataattaataaaacgtacgttttggtccctcactttttcctctgtttggcaaataaatcc----ctgctgttaagtttaaccccaaatgtctat 22049111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 39603907 - 39604030
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatg---tctatgatag 159  Q
    ||||||||||| |||| ||||||||||| |  |||||| ||||||| |||||||||| |   |    ||||||||||||| ||||||   |||||| |||    
T  39603907 aattaataaaacgtacgttttggtccctcaaattttcctccgtttgccaaataaatcatgact----gttaagtttaaccccaaatgatgtctatggtag 39604002  T
Q  160 accaaccttaagagtgttccaccataga 187  Q
    ||||||||||| |||| |||||||||||    
T  39604003 accaaccttaaaagtgatccaccataga 39604030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 22047786 - 22047844
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||||    
T  22047786 aattaataaaacgtacgttttggtccctcattttttcctccgtttgccaaataaatcct 22047844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 4127251 - 4127194
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||| ||||||| ||||||||||||||||| ||| ||||| |||| |||||||||||    
T  4127251 gttaactttaaccccaaatgtctatgatagatcaatcttaaaagtggtccaccataga 4127194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 97
Target Start/End: Complemental strand, 34899016 - 34898979
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttt 97  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  34899016 cataagtaataaaaagtacattttggtcccttagtttt 34898979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 35081435 - 35081352
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagcc 213  Q
    ||||| ||||||| |||||||||||  | || |||||||||||||  ||||||||| || | | ||||||||| ||||||||||    
T  35081435 gttaactttaacctcaaatgtctatagtggatcaaccttaagagttgtccaccataaaccttaataatttttttaattttagcc 35081352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 30859171 - 30859075
Alignment:
Q  130 gttaagtttaaccacaaatg---tctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    ||||||||||||| ||||||   |||||| | |||||| |||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  30859171 gttaagtttaaccccaaatgatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatttt 30859075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 295
Target Start/End: Complemental strand, 33173825 - 33173791
Alignment:
Q  261 ttattttacaatgatccaacaacaactaccattgg 295  Q
    |||| ||||||||||||||||||||||||||||||    
T  33173825 ttatcttacaatgatccaacaacaactaccattgg 33173791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 120
Target Start/End: Original strand, 34894206 - 34894260
Alignment:
Q  66 taataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    ||||||||||||| ||||||||||||||||||  | ||||||| |||| ||||||    
T  34894206 taataaaaagtaccttttggtcccttagttttgtctccgtttgccaaaaaaatcc 34894260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 39605531 - 39605473
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    |||||||||||  ||| ||||||||||| || |||||| ||||||| ||||||||||||    
T  39605531 aattaataaaacatacgttttggtccctcagattttcctccgtttgccaaataaatcct 39605473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 1010363 - 1010306
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||| ||||||| ||||||| |||| | ||||||||||||||||| ||| |||||||    
T  1010363 gttaactttaaccccaaatgtgtatggtggaccaaccttaagagtggtccgccataga 1010306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 8521372 - 8521429
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||| ||||||| ||||||| |||| | |||||||||||||| || |||||||||||    
T  8521372 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccataga 8521429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 15941324 - 15941385
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    |||||||||||||| ||||  |||||||||| | ||||||  ||||||||||||||| ||||    
T  15941324 cataattaataaaacgtaccatttggtccctcactttttcttccgtttgtcaaataagtcct 15941385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 26912291 - 26912251
Alignment:
Q  180 accatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||||||||||||||| ||||| ||||||| |||||||||    
T  26912291 accatagacttcattaaattttttaattttaaccgtttgat 26912251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 63130 - 63039
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||||||||||||  |||||||||||||| || ||| ||||||| || ||||||||| |||||||||||||||||||||||| |||||||||    
T  63130 tgttaagtttaacttcaaatgtctatgatggatcaatcttaagaatggtccaccataaacttcattaattttttaaattttaaccgtttgat 63039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 124023 - 124143
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt-cgttgttgttaagtttaaccacaaatgtctatgatagac 161  Q
    ||||||||||| |||||||||||||||| | ||||||| | ||||| ||||||||||||| ||     ||||||||||||| ||||| |||||| | |||    
T  124023 aattaataaaacgtacattttggtccctcactttttcctctgtttgccaaataaatccttacg-----gttaagtttaaccccaaatatctatggtggac 124117  T
Q  162 caaccttaagagtgttccaccataga 187  Q
    |||||||||||||| |||||||||||    
T  124118 caaccttaagagtggtccaccataga 124143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 125295 - 125157
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct-tcgttgttgttaagtttaaccacaa---atgtctatgata 158  Q
    ||||||||||| |||| ||||||||||| | ||||||| ||||||| ||||||||||||  ||     ||||||||||||| |||   |||| ||||||     
T  125295 aattaataaaacgtaccttttggtccctcactttttcctccgtttgccaaataaatcctaacg-----gttaagtttaaccccaaatgatgtatatgatg 125201  T
Q  159 gaccaaccttaagagtgttccaccatagacttcattaatttttt 202  Q
    |||||||||||| |||| |||||||||||| | ||||| |||||    
T  125200 gaccaaccttaaaagtggtccaccatagaccttattaaattttt 125157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 42872257 - 42872114
Alignment:
Q  57 tctcataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatga 156  Q
    ||||||||| ||||||| |||| |||| |||| | | ||||||| ||||||||||||||||||||  |  |  ||||| ||||||| ||||||||||||     
T  42872257 tctcataatgaataaaacgtacgttttagtccttcactttttcctccgtttgtcaaataaatcct--gacg--gttaactttaacctcaaatgtctatgg 42872162  T
Q  157 tagaccaaccttaagagtgttccaccatagacttcattaattttttaa 204  Q
    ||||||||||||||||||| || ||||||||    |||||||||||||    
T  42872161 tagaccaaccttaagagtggtctaccatagatcctattaattttttaa 42872114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 38696427 - 38696519
Alignment:
Q  131 ttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    ||||||||||||  ||||||||||| |||||||||||||| |||| |||||||||||  | ||||||||||  ||||||| || |||||||||    
T  38696427 ttaagtttaaccctaaatgtctatggtagaccaaccttaaaagtggtccaccatagatctaattaatttttataattttaaccctttgatttt 38696519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 14840896 - 14840807
Alignment:
Q  131 ttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||||||||||||||||||||||| | ||||||| |||| |||| ||||||||||   | ||||| ||||| ||||| | |||||||||    
T  14840896 ttaagtttaaccacaaatgtctatggtggaccaacattaaaagtgatccaccatagttcttattaaattttttaatttaaaccgtttgat 14840807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 63 - 185
Target Start/End: Complemental strand, 8571679 - 8571559
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatccttcgttgttgttaagtttaaccacaaatgtctatgatagacc 162  Q
    ||||||||||| |||| ||||||||| | | ||||| | ||||||  ||||||||||| | ||   |||||||||||||| |||||||||||| | ||||    
T  8571679 aattaataaaacgtacgttttggtccttcatttttttctccgtttaccaaataaatccctagtc--tgttaagtttaaccccaaatgtctatggtggacc 8571582  T
Q  163 aaccttaagagtgttccaccata 185  Q
    ||| |||| | || |||||||||    
T  8571581 aactttaaaaatggtccaccata 8571559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 10669444 - 10669386
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    |||||| ||||||| |||||||||||| |  |||||||||||||||| |||||||||||    
T  10669444 tgttaactttaacctcaaatgtctatggtgaaccaaccttaagagtggtccaccataga 10669386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 24192662 - 24192604
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    |||||| |||||||  ||||||||||| | ||||||||||||||||| |||||||||||    
T  24192662 tgttaactttaaccctaaatgtctatggtggaccaaccttaagagtggtccaccataga 24192604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 22551122 - 22551214
Alignment:
Q  128 ttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    ||||||||||||||| ||||| |||||| | ||| |||||||| |||| ||||||||| || | ||||| ||||  ||||| | |||||||||    
T  22551122 ttgttaagtttaaccccaaatctctatggtggacaaaccttaaaagtgatccaccataaaccttattaaattttgtaatttaaaccgtttgat 22551214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 122
Target Start/End: Original strand, 26696586 - 26696645
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 122  Q
    |||||||||||  ||||||||||||||| | ||||||| || |||| |||||||||||||    
T  26696586 aattaataaaacatacattttggtccctcactttttcctccatttgccaaataaatcctt 26696645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 7486239 - 7486285
Alignment:
Q  177 tccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    |||||||||||| | ||||| |||||||||||||||| |||||||||    
T  7486239 tccaccatagaccttattaaatttttaaattttagccttttgatttt 7486285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 462
Target Start/End: Complemental strand, 17594524 - 17594454
Alignment:
Q  392 accattttctttatcctctcgacgaggactttccattggtccaactgatttcatgaaaggaacaacttttc 462  Q
    |||||||||||| ||| |||||||||  |||||| ||||||||| |  ||||| ||||||| |||||||||    
T  17594524 accattttctttttccactcgacgagagctttccgttggtccaattagtttcacgaaaggagcaacttttc 17594454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 32798594 - 32798536
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||| |||| |||| |||||| | ||||| | ||||||||||||||||||||    
T  32798594 aattaataaaacgtaccttttagtccctcaattttttctccgtttgtcaaataaatcct 32798536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 121
Target Start/End: Complemental strand, 30787665 - 30787604
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||||||  || |||||||||||| | ||||||  ||||||| ||||||||||||    
T  30787665 cataattaataaaatatatattttggtccctcactttttcttccgtttgccaaataaatcct 30787604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 42877736 - 42877793
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||| ||||||| ||||||| |||| | |||||||||||||| || |||||||||||    
T  42877736 gttaactttaaccccaaatgtgtatggtggaccaaccttaagaatggtccaccataga 42877793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 17455164 - 17455252
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgttt 217  Q
    |||||| ||||||  ||||| |||||| |||||||| ||||| |||| |||||||||||  | ||||||| ||| ||||| | ||||||    
T  17455164 tgttaactttaacttcaaatatctatgctagaccaatcttaaaagtggtccaccatagatcttattaattattttaatttgaaccgttt 17455252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 32507025 - 32506952
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaatttttt 202  Q
    |||||||||||||| ||||| |||||| | ||||||||||||||||| || |||||| ||||||||||||||||    
T  32507025 tgttaagtttaaccccaaatatctatggtggaccaaccttaagagtggtctaccatatacttcattaatttttt 32506952  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 32505785 - 32505876
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcatt-aattttttaaattttagccgtttgat 220  Q
    |||||||||||||| ||||||||||| || || |||| ||||||||| |||||||||||| | ||| |||||||||| ||| | |||||||||    
T  32505785 tgttaagtttaaccccaaatgtctataatgga-caacattaagagtggtccaccatagaccttattaaattttttaagtttaaaccgtttgat 32505876  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 12669840 - 12669898
Alignment:
Q  129 tgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    |||||| ||||||| ||||||| |||| | ||||||||||||||||| |||||||||||    
T  12669840 tgttaactttaacctcaaatgtgtatggtggaccaaccttaagagtggtccaccataga 12669898  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 34024126 - 34024073
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataa 116  Q
    ||||||||||| |||||||||| ||||| | ||||||| |||||||||||||||    
T  34024126 aattaataaaatgtacattttgatccctcactttttcctccgtttgtcaaataa 34024073  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 6452336 - 6452396
Alignment:
Q  61 ataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcct 121  Q
    ||||||||||||| |||| |||| |||||| | ||||||| ||||||| ||||||||||||    
T  6452336 ataattaataaaaggtacgttttagtccctcactttttcctccgtttgccaaataaatcct 6452396  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 6452576 - 6452514
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 122  Q
    |||||||||||||| |||| |||  |||||| | ||||||| ||||||| |||||||||||||    
T  6452576 cataattaataaaacgtacgtttgagtccctcattttttcctccgtttgccaaataaatcctt 6452514  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 294
Target Start/End: Complemental strand, 32506887 - 32506854
Alignment:
Q  261 ttattttacaatgatccaacaacaactaccattg 294  Q
    |||| |||||||||||||||||||||||||||||    
T  32506887 ttatcttacaatgatccaacaacaactaccattg 32506854  T

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Target: scaffold2071 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 681 - 589
Alignment:
Q  128 ttgttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgat 220  Q
    |||| |||||||||| ||||||| ||| || ||||||||||||||||| |||||||||||| | ||||| ||||| ||||| | |||||||||    
T  681 ttgtcaagtttaacctcaaatgtatataatggaccaaccttaagagtggtccaccatagaccttattaaattttttaatttaaaccgtttgat 589  T

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Target: scaffold1152 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold1152
Description:

Target: scaffold1152; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 2538 - 2483
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaat 118  Q
    |||||||||||||||| ||||||||||||||||||||| | ||||  |||||||||    
T  2538 aattaataaaaagtaccttttggtcccttagtttttcctctgttttccaaataaat 2483  T

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Target: scaffold0118 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 130 - 223
Target Start/End: Complemental strand, 43574 - 43478
Alignment:
Q  130 gttaagtttaaccacaa---atgtctatgatagaccaaccttaagagtgttccaccatagacttcattaattttttaaattttagccgtttgatttt 223  Q
    ||||||||||||| |||   ||||||||| | |||||| |||||||||| |||||||||||    ||||||| ||| ||||| | ||||||||||||    
T  43574 gttaagtttaaccccaagtgatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattttaatttaaaccgtttgatttt 43478  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 108564 - 108626
Alignment:
Q  60 cataattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcctt 122  Q
    |||||||||||||| |||| ||||| ||||| | ||||||| || |||| |||||||||||||    
T  108564 cataattaataaaacgtacgttttgatccctcattttttcctccatttgccaaataaatcctt 108626  T

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Target: scaffold0077 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 52646 - 52703
Alignment:
Q  63 aattaataaaaagtacattttggtcccttagtttttccaccgtttgtcaaataaatcc 120  Q
    ||||||||||| |||| ||||||||||| || |||| | ||||||| |||||||||||    
T  52646 aattaataaaatgtacgttttggtccctcagatttttctccgtttgccaaataaatcc 52703  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 127551 - 127608
Alignment:
Q  130 gttaagtttaaccacaaatgtctatgatagaccaaccttaagagtgttccaccataga 187  Q
    ||||| ||||||| |||||||||||| |  | |||||||||||||| |||||||||||    
T  127551 gttaactttaacctcaaatgtctatggtgaaacaaccttaagagtggtccaccataga 127608  T

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