View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3639_low_41 (Length: 267)

Name: NF3639_low_41
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3639_low_41
NF3639_low_41
[»] chr3 (3 HSPs)
chr3 (3-245)||(25809675-25809917)
chr3 (147-249)||(25911487-25911589)
chr3 (154-196)||(7441360-7441402)
[»] chr2 (2 HSPs)
chr2 (147-249)||(11482580-11482682)
chr2 (1-43)||(12399357-12399399)
[»] chr8 (3 HSPs)
chr8 (153-248)||(25270047-25270142)
chr8 (167-225)||(17032467-17032525)
chr8 (167-225)||(17562903-17562961)
[»] chr1 (2 HSPs)
chr1 (147-245)||(27324939-27325037)
chr1 (147-225)||(43058617-43058696)
[»] chr4 (1 HSPs)
chr4 (147-246)||(49130539-49130638)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 25809675 - 25809917
Alignment:
Q  3 catgctaggcaaaccctagcagagcgtgaaacatcattttttcacaatatcttcaaaaatataataaaatacgtgatctcatttacattgttttgtcaac 102  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||||||    
T  25809675 catgctaggcaaaccatagcagagcgtgaaacatcattttttcacaatatcttaaaaaatataataaaataagttatctcatttacattgtcttgtcaac 25809774  T
Q  103 taaaaattcatccaattaacagttgtattatnnnnnnnnnnnntagattcgtaatttataacattagtaaactatgtcatttattttattaaagtacacg 202  Q
    |||||||||||||||||||||||||||||||             | |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  25809775 taaaaattcatccaattaacagttgtattataaaaaataaaaaaatattcgtaatttataacattagtaaactatgtcatttattttattaaagtacact 25809874  T
Q  203 agcttttttgtcaaatttttaatcgtccaaccaaactattttt 245  Q
    ||||||||||||||| ||||||||| |||||||||||||||||    
T  25809875 agcttttttgtcaaacttttaatcgcccaaccaaactattttt 25809917  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 25911589 - 25911487
Alignment:
Q  147 agattcgtaatttataacattagtaaactatgtcatttattttattaaagtacacgagcttttttgtcaaatttttaatcgtccaaccaaactatttttt 246  Q
    |||||||||||||||| || ||||||||||||| |||| |||| ||| ||||| |||||||||| |||||| |||| || |  || |||||| |||||||    
T  25911589 agattcgtaatttatagcagtagtaaactatgtaatttttttttttatagtacccgagctttttagtcaaacttttgatggcacatccaaacaatttttt 25911490  T
Q  247 cta 249  Q
    |||    
T  25911489 cta 25911487  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 7441402 - 7441360
Alignment:
Q  154 taatttataacattagtaaactatgtcatttattttattaaag 196  Q
    ||||||||| |||||||||||||||| ||||||||| ||||||    
T  7441402 taatttatagcattagtaaactatgtaatttatttttttaaag 7441360  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 11482682 - 11482580
Alignment:
Q  147 agattcgtaatttataacattagtaaactatgtcatttattttattaaagtacacgagcttttttgtcaaatttttaatcgtccaaccaaactatttttt 246  Q
    |||||||||||||||| || ||||||||||||| ||| ||||| ||||||||| | | |||||| |||||| ||||||| | ||| ||||||||||||||    
T  11482682 agattcgtaatttataccagtagtaaactatgtaattcatttttttaaagtactcaaactttttagtcaaacttttaatggcccacccaaactatttttt 11482583  T
Q  247 cta 249  Q
    |||    
T  11482582 cta 11482580  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 12399357 - 12399399
Alignment:
Q  1 ctcatgctaggcaaaccctagcagagcgtgaaacatcattttt 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  12399357 ctcatgctaggcaaaccctagcaaagcgtgaaacatcattttt 12399399  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 25270047 - 25270142
Alignment:
Q  153 gtaatttataacattagtaaactatgtcatttattttattaaagtacacgagcttttttgtcaaatttttaatcgtccaaccaaactattttttct 248  Q
    ||||||||||  | ||||||||||||| ||||||||| ||||||||| ||| |||||| ||||| |||||||| | ||| ||||||||||||||||    
T  25270047 gtaatttatagtagtagtaaactatgtaatttatttttttaaagtacccgacctttttagtcaagtttttaatggcccacccaaactattttttct 25270142  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 17032525 - 17032467
Alignment:
Q  167 tagtaaactatgtcatttattttattaaagtacacgagcttttttgtcaaatttttaat 225  Q
    ||||||||||||| |||||||||  |||| |||||||||||||| || ||| |||||||    
T  17032525 tagtaaactatgtaatttatttttctaaaatacacgagctttttagtgaaacttttaat 17032467  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 17562961 - 17562903
Alignment:
Q  167 tagtaaactatgtcatttattttattaaagtacacgagcttttttgtcaaatttttaat 225  Q
    ||||||||||||| |||||||||  |||| |||||||||||||| || ||| |||||||    
T  17562961 tagtaaactatgtaatttatttttctaaaatacacgagctttttagtgaaacttttaat 17562903  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 27324939 - 27325037
Alignment:
Q  147 agattcgtaatttataacattagtaaactatgtcatttattttattaaagtacacgagcttttttgtcaaatttttaatcgtccaaccaaactattttt 245  Q
    |||||||||||||||| || |||||||||| || |||||||||  ||| |||| |||| ||||| |||||| ||||||| | ||| |||||||||||||    
T  27324939 agattcgtaatttatagcagtagtaaactacgtaatttatttttctaatgtacccgagatttttagtcaaacttttaatggcccatccaaactattttt 27325037  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 43058696 - 43058617
Alignment:
Q  147 agattcgtaatttataacattagtaaactatgtcattta-ttttattaaagtacacgagcttttttgtcaaatttttaat 225  Q
    ||||| ||||||||||  | ||||||||||||| ||||| |||| |||||||||  ||||||||| |||||| |||||||    
T  43058696 agatttgtaatttatagaagtagtaaactatgtaatttattttttttaaagtacctgagctttttagtcaaacttttaat 43058617  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 49130539 - 49130638
Alignment:
Q  147 agattcgtaatttataacattagtaaactatgtcatttattttattaaagtacacgagcttttttgtcaaatttttaatcgtccaaccaaactatttttt 246  Q
    |||||||||||||||  |  ||||||||||||| ||||||||| | ||| ||| |||| ||||| |||||| ||||||| |  || ||||||||||||||    
T  49130539 agattcgtaatttattgccatagtaaactatgtaatttattttttaaaaatactcgagttttttagtcaaaattttaatggctcacccaaactatttttt 49130638  T

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