View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3639_low_44 (Length: 258)

Name: NF3639_low_44
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3639_low_44
NF3639_low_44
[»] chr3 (9 HSPs)
chr3 (22-258)||(42606377-42606613)
chr3 (22-258)||(2388729-2388965)
chr3 (22-254)||(36899355-36899587)
chr3 (22-258)||(45539396-45539632)
chr3 (22-254)||(27475485-27475717)
chr3 (22-254)||(34949943-34950175)
chr3 (22-254)||(22406944-22407176)
chr3 (22-258)||(46689779-46690015)
chr3 (22-177)||(4199633-4199788)
[»] chr1 (8 HSPs)
chr1 (22-258)||(47410610-47410846)
chr1 (22-258)||(9122782-9123018)
chr1 (22-258)||(46802419-46802655)
chr1 (22-254)||(45230231-45230463)
chr1 (22-258)||(32266580-32266816)
chr1 (22-258)||(40124173-40124409)
chr1 (22-254)||(30427775-30428007)
chr1 (22-258)||(17968224-17968460)
[»] chr6 (8 HSPs)
chr6 (22-258)||(14257244-14257480)
chr6 (22-258)||(15147815-15148051)
chr6 (22-258)||(20824261-20824497)
chr6 (22-254)||(33107031-33107263)
chr6 (22-180)||(6162432-6162590)
chr6 (52-188)||(34984283-34984419)
chr6 (51-177)||(20227797-20227923)
chr6 (51-177)||(22121781-22121907)
[»] chr4 (14 HSPs)
chr4 (22-258)||(2669194-2669430)
chr4 (22-258)||(28957498-28957734)
chr4 (22-258)||(31228066-31228302)
chr4 (22-258)||(40841559-40841795)
chr4 (22-258)||(55347658-55347894)
chr4 (22-254)||(12922829-12923061)
chr4 (22-254)||(43979659-43979891)
chr4 (22-254)||(46262822-46263054)
chr4 (22-254)||(30545816-30546048)
chr4 (24-258)||(38025865-38026099)
chr4 (22-254)||(790082-790314)
chr4 (22-254)||(1317162-1317394)
chr4 (22-179)||(28505386-28505543)
chr4 (22-177)||(21235208-21235363)
[»] chr7 (8 HSPs)
chr7 (22-191)||(22954233-22954402)
chr7 (22-254)||(28898216-28898448)
chr7 (22-254)||(1244113-1244345)
chr7 (51-254)||(884784-884987)
chr7 (22-258)||(33847963-33848199)
chr7 (22-221)||(41298379-41298578)
chr7 (22-180)||(29784122-29784280)
chr7 (22-177)||(18443356-18443511)
[»] chr5 (9 HSPs)
chr5 (22-258)||(21949497-21949733)
chr5 (22-258)||(6543512-6543748)
chr5 (22-258)||(5746948-5747184)
chr5 (22-258)||(28641348-28641584)
chr5 (22-258)||(31162518-31162754)
chr5 (22-254)||(31093097-31093329)
chr5 (22-254)||(3878874-3879106)
chr5 (25-177)||(39402402-39402554)
chr5 (22-173)||(3191982-3192133)
[»] chr2 (11 HSPs)
chr2 (22-258)||(1804419-1804655)
chr2 (22-258)||(6476184-6476420)
chr2 (22-258)||(11450943-11451179)
chr2 (22-254)||(3854168-3854400)
chr2 (22-254)||(22701614-22701846)
chr2 (22-258)||(27377746-27377982)
chr2 (22-254)||(12089796-12090028)
chr2 (22-254)||(26525563-26525797)
chr2 (22-254)||(34037996-34038240)
chr2 (22-177)||(39096711-39096866)
chr2 (104-221)||(38110246-38110363)
[»] scaffold0085 (1 HSPs)
scaffold0085 (22-258)||(39608-39844)
[»] chr8 (3 HSPs)
chr8 (22-254)||(12734360-12734592)
chr8 (22-177)||(29917292-29917447)
chr8 (51-177)||(42253353-42253479)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 42606613 - 42606377
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42606613 aacaccttccatacctgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactggaaat 42606514  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  42606513 gtgacgaacagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgccaacattggcat 42606414  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  42606413 cacgttagaaatttgacaacagggactatttacgcta 42606377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 2388965 - 2388729
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2388965 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactggaaat 2388866  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  2388865 gtgacgaacggtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgtttttcggcgagattgaaccgccaacattggcat 2388766  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||| ||||    
T  2388765 cacgttagaaatttgacaacagggactatttaagcta 2388729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 36899587 - 36899355
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36899587 aacaccttccatactcgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactggaaat 36899488  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||||  |||    
T  36899487 gtgacgaacagtggtgatccgcatctacgacgctgaggagaaagatcgtggtgaaattctccgccgtttttcggcgagattgaaccgccaacattgacat 36899388  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  36899387 cacgttagaaatttgacaacagggactatttac 36899355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 45539396 - 45539632
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  45539396 aacaccttccacacccgcaacagcaagcactttcaacgataacatcattgctttcggcctccaaatcttcccctctaaaccaacatatttcactagaaat 45539495  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||    
T  45539496 gtgacgaacaacggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccctgccgttttccggggagattgaaccgccaacattggcat 45539595  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  45539596 cacgttagaaatttgacaacagggactatttacgcta 45539632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 27475485 - 27475717
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |    
T  27475485 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaatcaacatatttcaccggaagt 27475584  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  27475585 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 27475684  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  27475685 cacgttagaaatttgacaacagggactatttac 27475717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 34949943 - 34950175
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  34949943 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 34950042  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||| ||||    
T  34950043 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggggagattggaccgccaacattggcat 34950142  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  34950143 catgttagaaatttgacaacagggactatttac 34950175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 22407176 - 22406944
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |    
T  22407176 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccagaagt 22407077  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||    
T  22407076 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagttcgtggtgaagttctccgccattttccggcgagattgaaccgccaacattggcat 22406977  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  22406976 cacgttagaaatttgacaacagggactatttac 22406944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 46690015 - 46689779
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||| ||||| |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| || ||||    
T  46690015 aacaccttccacacccgcaacaacaaacacttttaacgataacatcatcgctttcgacctccaaatctttccatctaaaccaacatatttcattggaaat 46689916  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  46689915 gtcacgaacaccggcgatccgcatctacgacattgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 46689816  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  46689815 cacgttagaaatttgacaacagggactatttacgcta 46689779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 4199788 - 4199633
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| | ||      
T  4199788 aacaccttccacacccgcaacaacaagcgctttcaacgacaacatcatcgctttcggcctccaaatcttcccctctaaaccaatatttttcaccggaagc 4199689  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaag 177  Q
    |||||||| |   |||||| |  |||||||||||||||||||||||||||||||||    
T  4199688 gtgacgaacaccagcgatctgtgtctacgacgctgcggagaaagatcgtggtgaag 4199633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 47410610 - 47410846
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  47410610 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactggaaat 47410709  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||    
T  47410710 gtgacgaacagtggcgatccgcatctacgacgttgcggagaaagatcgtggtgaagttccccgccgtttttcggcgagattgaaccgccaacattggcat 47410809  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  47410810 cacgttagaaatttgacaacagggactatttacgcta 47410846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 9123018 - 9122782
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  9123018 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgcttttggcctccaaatcttcccctctaaaccaacatatttcactggaaat 9122919  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||    
T  9122918 gtgacgaacagtggcgatccacatctacgacgctgtagagaaagatcgtggtgaagttccccgtcgtttttcggcgagattgaaccgccaacattggcat 9122819  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  9122818 cacgttagaaatttgacaacagtgactatttacgcta 9122782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 46802655 - 46802419
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| || ||||    
T  46802655 aacaccttccacacccgcaacagcaagcactttcaacgataacatcatcgctttcggcctccaaatcttcatctctaaaccaacatatttcagtggaaat 46802556  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  46802555 gtgacgaaaaccggcgatccgcatctacgacgatgcggagaaagaccgtggtgaagttccccgccattttccggcgagattgaaccgccaacattggcat 46802456  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  46802455 cacgttaaaaatttgacaacagggactatttacgcta 46802419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 45230463 - 45230231
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  45230463 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 45230364  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  45230363 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 45230264  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  45230263 cacgttagaaatttgacaacagggactatttac 45230231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 32266816 - 32266580
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  32266816 aacaccttccacacctgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 32266717  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||  |||    
T  32266716 gtcacgaacactggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccagcgagattgaaccaccaacattgacat 32266617  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| |  ||||||||||||||    
T  32266616 cacgttagaaatttgacaacaaggactatttacgcta 32266580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 40124409 - 40124173
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  40124409 aacaccttccacacccgcaacagcaaacactttcaacaataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 40124310  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  ||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  40124309 gtcacgaacaccggcgatctgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 40124210  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  40124209 cacgttagaaatttgacaacagggactatttacgcta 40124173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 30428007 - 30427775
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  30428007 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 30427908  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||  |||    
T  30427907 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgtttcccggcgagattgaaccgccaacattgacat 30427808  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  30427807 cacgttagaaatttgacaacagggactatttac 30427775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 17968224 - 17968460
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||| |||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  17968224 aacaccttccacacccgtaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 17968323  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||  |||    
T  17968324 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgtcaacattgacat 17968423  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || || |||||||||||    
T  17968424 cacgttagaaatttgacaacagggattatttacgcta 17968460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 181; Significance: 7e-98; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 14257480 - 14257244
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14257480 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactggaaat 14257381  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||  |||    
T  14257380 gtgacaaacagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgtttttcggcgagattgaaccgccaacattgacat 14257281  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  14257280 cacgttagaaatttgacaacagggactatttacgcta 14257244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 15148051 - 15147815
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  15148051 aacaccttccacacccgcaacaacaagcactttcaacgataacatcatcgctttcggcctcaaaatcttcccctctaaaccaacatatttcactggaaat 15147952  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
     ||||||| |  |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  15147951 ctgacgaacaccggcgatccgcatctacgatgctgcggagaaagatcgtggtaaagttccccgccgttttccggcgagattgaaccgccaacattggcat 15147852  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  15147851 cacgttagaaatttgacaacagggactatttacgcta 15147815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 20824497 - 20824261
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  20824497 aacaccttccacacccgcaacagcaaacacttttaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 20824398  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  20824397 gtcacgaacaccggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 20824298  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  20824297 cacgttagaaatttgacaacagggactatttacgcta 20824261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 33107263 - 33107031
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  33107263 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 33107164  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  33107163 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccaccgttttccggcgagattgaaccgccaacattggcat 33107064  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  33107063 cacgttagaaatttgacaacagggactatttac 33107031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 6162590 - 6162432
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||   |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||      
T  6162590 aacaccttccacacccgcaacagcaagcgctttcaacgataacatcatcactttcggcctccaaatctttccctctaaaccaacatatttcactggaagc 6162491  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttc 180  Q
    |||||||| |  | |||||||||||||||||||||||||||||||||||||||||||||    
T  6162490 gtgacgaacaccgacgatccgcatctacgacgctgcggagaaagatcgtggtgaagttc 6162432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 34984419 - 34984283
Alignment:
Q  52 tttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaatgtgacgaatagtggcgatccgcatctacga 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |  ||||||||||||||||||    
T  34984419 tttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagtgtgacgaacaccggcgatccgcatctacga 34984320  T
Q  152 cgctgcggagaaagatcgtggtgaagttccccgccgt 188  Q
     |||||||||||||||| ||||||||||| |||||||    
T  34984319 agctgcggagaaagatcatggtgaagttctccgccgt 34984283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 20227797 - 20227923
Alignment:
Q  51 ctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaatgtgacgaatagtggcgatccgcatctacg 150  Q
    |||||||||| |||||||||||||| || ||||||||| ||||||||||||||||| ||||||||| ||  |||||||| |  ||||||| |  |||| |    
T  20227797 ctttcaacgacaacatcatcgcttttggactccaaatcctcccctctaaaccaacaaatttcactggaagcgtgacgaacaccggcgatctgtgtctatg 20227896  T
Q  151 acgctgcggagaaagatcgtggtgaag 177  Q
    ||||||| |||||||||| ||||||||    
T  20227897 acgctgcagagaaagatcatggtgaag 20227923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 22121781 - 22121907
Alignment:
Q  51 ctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaatgtgacgaatagtggcgatccgcatctacg 150  Q
    |||||||||| |||||||||||||| || ||||||||| ||||||||||||||||| ||||||||| ||  |||||||| |  ||||||| |  |||| |    
T  22121781 ctttcaacgacaacatcatcgcttttggactccaaatcctcccctctaaaccaacaaatttcactggaagcgtgacgaacaccggcgatctgtgtctatg 22121880  T
Q  151 acgctgcggagaaagatcgtggtgaag 177  Q
    ||||||| |||||||||| ||||||||    
T  22121881 acgctgcagagaaagatcatggtgaag 22121907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 2669194 - 2669430
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  2669194 aacaccttccatactcgcaacggcaaaaactttcaacgataacatcatcgcttttggcctccaaatcttcccctctaaaccaacatatttcactggaaat 2669293  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||| ||||    
T  2669294 gtgacgaacagtggcaatccgcatatacgacgctgcggagaaagatcgtggtgaagttccccgccgttttttggcgagattgaaccgccaacattggcat 2669393  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| |  ||||||||||||||    
T  2669394 cacgttagaaatttgacaacatggactatttacgcta 2669430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 28957498 - 28957734
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  28957498 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 28957597  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  28957598 gtcacgaacaccggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 28957697  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  28957698 cacgttagaaatttgacaacagggactatttacgcta 28957734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 31228066 - 31228302
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  31228066 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 31228165  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  31228166 gtcacgaacaccggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 31228265  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  31228266 cacgttagaaatttgacaacagggactatttacgcta 31228302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 40841795 - 40841559
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  40841795 aacaccttccacacccgcaacagcaagcactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactagaaat 40841696  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||  |||||||||||||| ||||| ||||    
T  40841695 gtgacgaacaacggcgatccgcatctacgacgctgcggagaaagatcgtggcgaagttccctgccgttttccgaggagattgaaccgccaacattggcat 40841596  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  || ||| ||| || ||||||||||||||    
T  40841595 cacgttagaaacttgacaacagggactatttacgcta 40841559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 55347894 - 55347658
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||    
T  55347894 aacaccttccacacccgcaacagcaagcactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaagatatttcactagaaat 55347795  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||  |||    
T  55347794 gtgacgaacaccggcgatccgcatctacgaccctgcggagaaagatcgtggtgaagttccccgccgtttttcggggagattgaaccgccaacattgacat 55347695  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  55347694 cacgttagaaatttgacaacagggactatttacgcta 55347658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 12922829 - 12923061
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  12922829 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 12922928  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  12922929 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 12923028  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  12923029 cacgttagaaatttgacaacagggactatttac 12923061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 43979891 - 43979659
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || |    
T  43979891 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgttttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 43979792  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  43979791 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 43979692  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  43979691 cacgttagaaatttgacaacagggactatttac 43979659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 46262822 - 46263054
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |    
T  46262822 aacaccttccacacccgcaacaacaagcactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccagaagt 46262921  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||    
T  46262922 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagttcgtggtgaagttctccgccattttccggcgagattgaaccgccaacattggcat 46263021  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  46263022 cacgttagaaatttgacaacagggactatttac 46263054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 30546048 - 30545816
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || |    
T  30546048 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcgacctccaaatcttcccctctaaaccaacatatttcaccggaagt 30545949  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||    
T  30545948 gtgacgaacaccggcgatccgcatctacgaagctgcagagaaagatcgtggtgaagttctccaccgttttccggcgagattgaaccgccaacattggcat 30545849  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  30545848 cacgttagaaatttgacaacagggactatttac 30545816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 24 - 258
Target Start/End: Original strand, 38025865 - 38026099
Alignment:
Q  24 caccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaatgt 123  Q
    ||||||||| ||| |||||  |||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  38025865 caccttccacacctgcaacaacaagcactttcaacgataacatcatcgctttcggcctccaaatcttccccactaaaccaacatatttcactggaaatgt 38025964  T
Q  124 gacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcataa 223  Q
     || || |  ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||  ||| |    
T  38025965 aacaaacaccggcgatctgcatctacgacactgcggagaaagatcgtggtgaagttccccgtcgttttcctgcgagattgaaccgccaacattgacatca 38026064  T
Q  224 agttatgaatttgtcaatagagactatttacgcta 258  Q
     ||||  |||||| ||| || ||||||||||||||    
T  38026065 cgttagaaatttgacaacagggactatttacgcta 38026099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 790082 - 790314
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||| ||||  |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || |    
T  790082 aacaccttccacacccacaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccagaagt 790181  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||    
T  790182 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagttcgtggtgaagttctccgccattttccggcgagattgaaccgccaacattggcat 790281  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  790282 cacgttagaaatttgacaacagggactatttac 790314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 1317394 - 1317162
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    |||| |||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  1317394 aacaacttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 1317295  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||| ||| |  |||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||| | ||||| ||||    
T  1317294 gtgaggaacaccggcgatccgcatctacgaagctgcggagaaagttcgtggtgaagttcttcgccgttttccggcgagattgaaccgtcaacattggcat 1317195  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| |||||  ||||||||||    
T  1317194 cacgttagaaatttgacaatatggactatttac 1317162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 28505543 - 28505386
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||      
T  28505543 aacaccttccacacccgcaacaacaagcgctttcaacgacaacatcatcgctttcggcctccaaatcttcccctctaaaccaacatttttcaccggaagc 28505444  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagtt 179  Q
    |||||||| |   ||||||||  ||||||| |||||||||||||||||||||||||||    
T  28505443 gtgacgaacaccagcgatccgtgtctacgatgctgcggagaaagatcgtggtgaagtt 28505386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 21235363 - 21235208
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||  ||||   |||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||| ||      
T  21235363 aacaccttccacacccgcaatagcaagtgctttcaacgacaacatcatcactttcggccctcaaatcttcccctctaaaccaacatatttcactggaagc 21235264  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaag 177  Q
    |||||||| |  | ||||| |  |||||||  ||||||||||||||||||||||||    
T  21235263 gtgacgaacaccgacgatctgtgtctacgatactgcggagaaagatcgtggtgaag 21235208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 22954233 - 22954402
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22954233 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactggaaat 22954332  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgtttt 191  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22954333 gtgacgaacagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgtttt 22954402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 28898216 - 28898448
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  28898216 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 28898315  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  28898316 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 28898415  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  28898416 cacgttagaaatttgacaacagggactatttac 28898448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 1244345 - 1244113
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |    
T  1244345 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaatcaacatatttcaccggaagt 1244246  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  1244245 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 1244146  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  1244145 cacgttagaaatttgacaacagggactatttac 1244113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 51 - 254
Target Start/End: Complemental strand, 884987 - 884784
Alignment:
Q  51 ctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaatgtgacgaatagtggcgatccgcatctacg 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |  |||||||||||||||||    
T  884987 ctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagtgtgacgaacaccggcgatccgcatctacg 884888  T
Q  151 acgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcataaagttatgaatttgtcaatagagactat 250  Q
    | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| | ||||  |||||| ||| || ||||||    
T  884887 aagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcatcacgttagaaatttgacaacagggactat 884788  T
Q  251 ttac 254  Q
    ||||    
T  884787 ttac 884784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 33848199 - 33847963
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||  |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||    
T  33848199 aacaccttccacacccgcaacaacaagcactttcgacgataacatcatcgctttcggccttcaaatcttcccctctaaaccaacatatttcactagaaat 33848100  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||  || ||||| ||||    
T  33848099 gtgacgaacaccggcgatccgcatctacaacgctgcggagaaagatcgtggtgaagttccccgccgtttttcggggagattgaacaaccaacattggcat 33848000  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  33847999 cacgttagaaatttgacaacagggactatttacgcta 33847963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 41298578 - 41298379
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | || |    
T  41298578 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcttccaaatcttcccctctaaaccaacatatttcaccggaagt 41298479  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||| ||||    
T  41298478 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttcttcgccgttttccggcgagattgaaccgccaacattggcat 41298379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 29784122 - 29784280
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||      
T  29784122 aacaccttccacacccgcaacagcaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagc 29784221  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttc 180  Q
     ||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||    
T  29784222 atgacgaacaacggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttc 29784280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 18443511 - 18443356
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||| | ||      
T  18443511 aacaccttccacacccgcaacaacaagcgctttcaacgacaacatcatcgctttcggcctccaaatcttcccctctaaaccaatatttttcaccggaagc 18443412  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaag 177  Q
    |||||||| |   |||||| |  |||||||||||||||||||||||||||||||||    
T  18443411 gtgacgaacaccagcgatctgtgtctacgacgctgcggagaaagatcgtggtgaag 18443356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 21949733 - 21949497
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||    
T  21949733 aacaccttccacacccgcaacagcaagcactttcaacgataacatcatcgctttcgacctccaaatcttcccctctaaaccaacatatttcactagaaat 21949634  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||    
T  21949633 gtgacgaacagcggcgattcgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggggagattgaaccgccaacattggcat 21949534  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  21949533 cacgttagaaatttgacaacagggactatttacgcta 21949497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 6543748 - 6543512
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  6543748 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 6543649  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| | ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||  |||    
T  6543648 gtcacgaacactggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccagcgagattgaaccaccaacattgacat 6543549  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| |  ||||||||||||||    
T  6543548 cacgttagaaatttgacaacaaggactatttacgcta 6543512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 5746948 - 5747184
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||    
T  5746948 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcattggaaat 5747047  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  5747048 gtcacgaacaccggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 5747147  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  ||||||  || || ||||||||||||||    
T  5747148 cacgttagaaatttgataacagggactatttacgcta 5747184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 28641348 - 28641584
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  28641348 aacaccttccacacccgcaacaacaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 28641447  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  28641448 gtcacgaacaccggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 28641547  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     |  |||  |||||| ||| || ||||||||||||||    
T  28641548 cacattagaaatttgacaacagggactatttacgcta 28641584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 31162754 - 31162518
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  31162754 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 31162655  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  | ||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  31162654 gtcacgaacaccgacgatctgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 31162555  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  31162554 cacgttagaaatttgacaacagggactatttacgcta 31162518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 31093329 - 31093097
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | || |    
T  31093329 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggccttcaaatcttcccctctaaaccaacatatttcaccggaagt 31093230  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  31093229 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagttcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 31093130  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  31093129 cacgttagaaatttgacaacagggactatttac 31093097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 3879106 - 3878874
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| | || |    
T  3879106 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcactttcagcctccaaatcttcccctctaaatcaacatatttcaccggaagt 3879007  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||| ||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  3879006 gtgatgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 3878907  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  3878906 cacgttagaaatttgacaacagggactatttac 3878874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 177
Target Start/End: Original strand, 39402402 - 39402554
Alignment:
Q  25 accttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaatgtg 124  Q
    |||||||| |||| |||| ||||   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||    
T  39402402 accttccacacccacaacagcaagcgctttcaacgacaacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccgaaagcgtg 39402501  T
Q  125 acgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaag 177  Q
    ||||| |  | |||||||  ||||||||  ||| |||||||||||||||||||    
T  39402502 acgaacaccgacgatccgtgtctacgacattgcagagaaagatcgtggtgaag 39402554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 3192133 - 3191982
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||      
T  3192133 aacaccttccacacccgcaacaacaagcgctttcaacgacaacatcatcgctttcggcctccaaatcttcccctctaaaccaacatttttcaccggaagc 3192034  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggt 173  Q
    ||||| || |  ||||||||   |||||||||||||| |||||||| |||||    
T  3192033 gtgacaaacaccggcgatccatgtctacgacgctgcgaagaaagattgtggt 3191982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 1804419 - 1804655
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  1804419 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 1804518  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  1804519 gtcacgaacaccggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 1804618  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  1804619 cacgttagaaatttgacaacagggactatttacgcta 1804655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 6476420 - 6476184
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  6476420 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 6476321  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  6476320 gtcacgaacaccggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 6476221  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  6476220 cacgttagaaatttgacaacagggactatttacgcta 6476184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 11450943 - 11451179
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  11450943 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 11451042  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  11451043 gtcacgaacaccggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 11451142  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  11451143 cacgttagaaatttgacaacagggactatttacgcta 11451179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 3854400 - 3854168
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  3854400 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 3854301  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  3854300 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 3854201  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  3854200 cacgttagaaatttgacaacagggactatttac 3854168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 22701846 - 22701614
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  22701846 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 22701747  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  22701746 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaagatcgtgctgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 22701647  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  22701646 cacgttagaaatttgacaacagggactatttac 22701614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 27377982 - 27377746
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||    
T  27377982 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcattggaaat 27377883  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| |  |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||  |||    
T  27377882 gtcacgaacaccggcgatccgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccggcgagattgaaccaccaacattgacat 27377783  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  ||||||  || || ||||||||||||||    
T  27377782 cacgttagaaatttgataacagggactatttacgcta 27377746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 12090028 - 12089796
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  12090028 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 12089929  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||    
T  12089928 gtgacgaacaccggcgatccgcatctacgaagctgcggagaaaaatcgtggtgaagttctccgccgttttccggggagattgaaccgccaacattggcat 12089829  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||| || ||||||||||    
T  12089828 cacgttagaaatttgacaacagggactatttac 12089796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 254
Target Start/End: Complemental strand, 26525797 - 26525563
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||   ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | || |    
T  26525797 aacaccttccacacccgcaacagcaagcgctttcaatgataacatcatcgctttcggcctccaaatattcccctctaaaccaacatatttcatcggaagt 26525698  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttc--cccgccgttttccggcgagattgaaccgcctacattagc 219  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||     |  |||||||||||||||||||| ||| ||||| ||    
T  26525697 gtgacgaacagcggcgatccacatctacgacgctgcggagaaagatcgtggtgaagttcatagggaagttttccggcgagattgaactgccaacattggc 26525598  T
Q  220 ataaagttatgaatttgtcaatagagactatttac 254  Q
    || | ||||  |||||| ||| || ||||||||||    
T  26525597 atcacgttagaaatttgacaacagggactatttac 26525563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 34037996 - 34038240
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  34037996 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 34038095  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggt------------gaagttccccgccgttttccggcgagattgaaccgc 209  Q
    | |||||| |  || ||||||||||||||||||||||||||||||||| |||            ||||||| ||||||||||||||||||||||||||||    
T  34038096 gcgacgaacaccggtgatccgcatctacgacgctgcggagaaagatcgcggtgaagttcatagggaagttctccgccgttttccggcgagattgaaccgc 34038195  T
Q  210 ctacattagcataaagttatgaatttgtcaatagagactatttac 254  Q
    | ||||| |||| | ||||  |||||| ||| || ||||||||||    
T  34038196 caacattggcatcacgttagaaatttgacaacagggactatttac 34038240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 39096711 - 39096866
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||      
T  39096711 aacaccttccacacccgcaacaacaagcgctttcaacgacaacatcatcgctttcggcctccaaatcttcccctctaaaccaacatttttcaccggaagc 39096810  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaag 177  Q
    |||||||| |   |||||||   |||||||||||||| ||||||||||||||||||    
T  39096811 gtgacgaacaccagcgatccatgtctacgacgctgcgaagaaagatcgtggtgaag 39096866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 221
Target Start/End: Original strand, 38110246 - 38110363
Alignment:
Q  104 acatatttcactgaaaatgtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattg 203  Q
    ||||||||||||| ||||||||| || |  || ||||||||||||||||| |||||| |||||||||| |||| ||||| |||||||| ||| |||||||    
T  38110246 acatatttcactggaaatgtgacaaacaccggtgatccgcatctacgacgatgcggaaaaagatcgtgatgaaattccctgccgtttttcggtgagattg 38110345  T
Q  204 aaccgcctacattagcat 221  Q
    |  |||| ||||| ||||    
T  38110346 attcgccaacattggcat 38110363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 258
Target Start/End: Original strand, 39608 - 39844
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||    
T  39608 aacaccttccacacccgcaacagcaaacactttcaacgataacatcatcgctttcggcctccaaatctttccatctaaaccaacatatttcactggaaat 39707  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    || ||||| | |||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||  |||    
T  39708 gtcacgaacactggcgatctgcatctacgacgttgcggagaaagaccgtggtgaagttccccgccgttttccagcgagattgaaccaccaacattgacat 39807  T
Q  222 aaagttatgaatttgtcaatagagactatttacgcta 258  Q
     | ||||  |||||| ||| || ||||||||||||||    
T  39808 cacgttagaaatttgacaacagggactatttacgcta 39844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 12734360 - 12734592
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  12734360 aacaccttccacacccgcaacaacaagcgctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcaccggaagt 12734459  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaagttccccgccgttttccggcgagattgaaccgcctacattagcat 221  Q
    |||||||| |  |||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  12734460 gtgacgaacaccggcgatccgcatctacgaagctgcagagaaagatcgtggtgaagttctccgccgttttccggcgagattgaaccgccaacattggcat 12734559  T
Q  222 aaagttatgaatttgtcaatagagactatttac 254  Q
     | ||||  |||||| ||  || ||||||||||    
T  12734560 cacgttagaaatttgacagcagggactatttac 12734592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 29917292 - 29917447
Alignment:
Q  22 aacaccttccatacccgcaacggcaaaaactttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaat 121  Q
    ||||||||||| |||||||||  |||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||      
T  29917292 aacaccttccacacccgcaacaacaagcgctttcaacgacaacatcatcgctttcggcctccaaatcttcccctctaaaccaacatttttcaccggaagc 29917391  T
Q  122 gtgacgaatagtggcgatccgcatctacgacgctgcggagaaagatcgtggtgaag 177  Q
    |||||||| |   ||||||||  |||||||||||| ||||||||||||||||||||    
T  29917392 gtgacgaacaccagcgatccgtgtctacgacgctgaggagaaagatcgtggtgaag 29917447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 42253353 - 42253479
Alignment:
Q  51 ctttcaacgataacatcatcgctttcggcctccaaatcttcccctctaaaccaacatatttcactgaaaatgtgacgaatagtggcgatccgcatctacg 150  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||| || | ||  || || ||||  |||||||||  ||||||    
T  42253353 ctttcaacgacagcatcatcgctttcggcctccaaatcttcccctctaaaccaacagatttaaccggaagcgtcacaaataccggcgatccgagtctacg 42253452  T
Q  151 acgctgcggagaaagatcgtggtgaag 177  Q
    |||||| ||||||||||||||||||||    
T  42253453 acgctgtggagaaagatcgtggtgaag 42253479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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