View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_47 (Length: 252)
Name: NF3639_low_47
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_47 |
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| [»] scaffold1485 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 4834074 - 4833853
Alignment:
| Q |
7 |
gtttcatcacaagtttataacttataactctgcttggtaaccccttattgattatgtaaataccaattttatcctttgaagtttattataatttcataca |
106 |
Q |
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| T |
4834074 |
gtttcatcacaagcttataacttataactctgcttggtaatcccttat-gattatctaaaaaccaattttaccctttgaagtttattataatttcataaa |
4833976 |
T |
|
| Q |
107 |
atagttcaatgtttcatttatacttttactctagccattatttttgtacctgaagggttttaatttgttgttagcaatagatggtcgattcttctttaga |
206 |
Q |
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| T |
4833975 |
acagttcaatgtttcatttatatttttactttagtcgttatttttgtacccgaagggttttaatttgttgttagcgatagatggttgattctcctttaga |
4833876 |
T |
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| Q |
207 |
aaaggatctggatcctctcttgt |
229 |
Q |
| |
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| T |
4833875 |
aaaggatctggatcctctcttgt |
4833853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 244
Target Start/End: Complemental strand, 4872951 - 4872767
Alignment:
| Q |
58 |
ttatgtaaataccaattttatcctttgaagtttattataatttcatacaatagttcaatgtttcatttatacttttactctagccattatttttgtacct |
157 |
Q |
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| T |
4872951 |
ttatctaaaaaccaattttaccctttgaagtttattataatttaataacatagttcaatgttacgtttatattttcaccttgatcgttatttttgtacat |
4872852 |
T |
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| Q |
158 |
gaagggttttaatttgttgttagcaatagatggtcgattcttctttagaaaaggatctggatcctctcttgtcgattctcctttgct |
244 |
Q |
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| T |
4872851 |
gatgggtttaaatttgtcgttat--atagatggttgattgtcctttagaaaaggatcgggatcctcttttttcgattctcttttgct |
4872767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 4850981 - 4850770
Alignment:
| Q |
8 |
tttcatcacaagtttataacttataactctgcttggtaaccccttat-tgattatgtaaataccaattttatcctttgaagtttattataatttcataca |
106 |
Q |
| |
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|||| ||||||| ||||||||| |||| || ||||||||||||||| || |||| |||| |||||||||| |||||||||||||||||||||| ||| | |
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| T |
4850981 |
tttcttcacaagcttataacttgtaaccctatttggtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattataatttaataaa |
4850882 |
T |
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| Q |
107 |
atagttcaatgtttcatttatacttttactctagccattatttttgtacctgaagggttttaatttgttgttagcaatagatggtcgattcttctttaga |
206 |
Q |
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| T |
4850881 |
attgttcaatgttccgtttatattttttaccttgatcgtttttttgtacttgatgggtttaaatttgtcgtta--tatagatggttgattctcctttaga |
4850784 |
T |
|
| Q |
207 |
aaaggatctggatc |
220 |
Q |
| |
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| T |
4850783 |
aaaggatcgggatc |
4850770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 244
Target Start/End: Complemental strand, 4854962 - 4854762
Alignment:
| Q |
43 |
gtaaccccttat-tgattatgtaaataccaattttatcctttgaagtttattataatttcatacaatagttcaatgtttcatttatacttttactctagc |
141 |
Q |
| |
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|||||||||||| || |||| |||| |||||||||| ||||||||||||||||| |||| ||| |||||||||||||| | |||||| ||| || || || |
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| T |
4854962 |
gtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgtttatattttcac-cttgc |
4854864 |
T |
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| Q |
142 |
-cattatttttgtacctgaagggttttaatttgttgttagcaatagatggtcgattcttctttagaaaaggatctggatcctctcttgtcgattctcctt |
240 |
Q |
| |
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| T |
4854863 |
tcgttatttttgtacttgatgggtttaaaattgtcatta--tatagatggttgattctcctttagaaaaggatcaagatcctcttttttcgattctcttt |
4854766 |
T |
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| Q |
241 |
tgct |
244 |
Q |
| |
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|||| |
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| T |
4854765 |
tgct |
4854762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 244
Target Start/End: Complemental strand, 4876697 - 4876497
Alignment:
| Q |
43 |
gtaaccccttat-tgattatgtaaataccaattttatcctttgaagtttattataatttcatacaatagttcaatgtttcatttatacttttactctagc |
141 |
Q |
| |
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|||||||||||| || |||| |||| |||||||||| ||||||||||||||||| |||| ||| |||||||||||||| | |||||| ||| || || || |
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| T |
4876697 |
gtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgtttatattttcac-cttgc |
4876599 |
T |
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| Q |
142 |
-cattatttttgtacctgaagggttttaatttgttgttagcaatagatggtcgattcttctttagaaaaggatctggatcctctcttgtcgattctcctt |
240 |
Q |
| |
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| T |
4876598 |
tcgttatttttgtacttgatgggtttaaaattgtcatta--tatagatggttgattctcctttagaaaaggatcaagatcctcttttttcgattctcttt |
4876501 |
T |
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| Q |
241 |
tgct |
244 |
Q |
| |
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|||| |
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| T |
4876500 |
tgct |
4876497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1485 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold1485
Description:
Target: scaffold1485; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 31 - 231
Alignment:
| Q |
43 |
gtaaccccttat-tgattatgtaaataccaattttatcctttgaagtttattataatttcatacaatagttcaatgtttcatttatacttttactctagc |
141 |
Q |
| |
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|||||||||||| || |||| |||| |||||||||| ||||||||||||||||| |||| ||| |||||||||||||| | |||||| ||| || || || |
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| T |
31 |
gtaaccccttatatgtttatctaaaaaccaattttaccctttgaagtttattatcatttaataaaatagttcaatgttacgtttatattttcac-cttgc |
129 |
T |
|
| Q |
142 |
-cattatttttgtacctgaagggttttaatttgttgttagcaatagatggtcgattcttctttagaaaaggatctggatcctctcttgtcgattctcctt |
240 |
Q |
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| |||||||||||| ||| |||||| || |||| ||| ||||||||| |||||| ||||||||||||||| |||||||| || ||||||||| || |
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| T |
130 |
tcgttatttttgtacttgatgggtttaaaattgtcatta--tatagatggttgattctcctttagaaaaggatcaagatcctcttttttcgattctcttt |
227 |
T |
|
| Q |
241 |
tgct |
244 |
Q |
| |
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|||| |
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|
| T |
228 |
tgct |
231 |
T |
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