View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3639_low_49 (Length: 249)

Name: NF3639_low_49
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3639_low_49
NF3639_low_49
[»] chr4 (6 HSPs)
chr4 (21-238)||(7655481-7655698)
chr4 (23-238)||(7637625-7637843)
chr4 (21-231)||(7606801-7607014)
chr4 (27-223)||(7615805-7616004)
chr4 (27-231)||(7629186-7629393)
chr4 (21-94)||(39098372-39098445)
[»] chr7 (4 HSPs)
chr7 (39-220)||(8910525-8910709)
chr7 (27-217)||(8935448-8935641)
chr7 (27-186)||(8934507-8934669)
chr7 (27-91)||(8930052-8930116)
[»] chr3 (2 HSPs)
chr3 (27-231)||(40146736-40146940)
chr3 (21-170)||(8103105-8103254)
[»] chr6 (2 HSPs)
chr6 (21-160)||(11969547-11969686)
chr6 (21-187)||(6501119-6501285)
[»] scaffold0190 (1 HSPs)
scaffold0190 (132-160)||(5071-5099)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 7655481 - 7655698
Alignment:
Q  21 aactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacg 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7655481 aactacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacg 7655580  T
Q  121 ggcagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttccaaa 220  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7655581 gacagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtttccaaa 7655680  T
Q  221 tggaattcaacgacctat 238  Q
    ||||||||||||||||||    
T  7655681 tggaattcaacgacctat 7655698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 238
Target Start/End: Complemental strand, 7637843 - 7637625
Alignment:
Q  23 ctatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctt-taatttcaaccatgttgtagctgacgg 121  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| || |||||||| |  | |||| ||||||||||| | ||||||    
T  7637843 ctatgaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcattt-aaccatgttgtcgttgacgg 7637745  T
Q  122 gcagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgt---catcatcaaatatctaactccccaacgctagagcgttggtttcca 218  Q
      |||||  |||||||||||||||||| ||||||||||| |||||| |||||   |||||||||||||||||  ||||||| ||||||||||||||||||    
T  7637744 aaagtccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttcca 7637645  T
Q  219 aatggaattcaacgacctat 238  Q
    |||||  ||||||| |||||    
T  7637644 aatggtgttcaacggcctat 7637625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 231
Target Start/End: Complemental strand, 7607014 - 7606801
Alignment:
Q  21 aactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacg 120  Q
    |||||||||||||| |||||||||||||||||||||||| | || |||||||||||||| || |||||||| |     |||||||||||||| | |||||    
T  7607014 aactatgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacg 7606915  T
Q  121 ggcagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatc---atcaaatatctaactccccaacgctagagcgttggtttcc 217  Q
    |  |||||  |||||||||||||||||| ||||||||||| ||||| ||||||  |    |||||||||| ||  ||||||| |||||||||||||||||    
T  7606914 gaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttcc 7606815  T
Q  218 aaatggaattcaac 231  Q
    |||||| |||||||    
T  7606814 aaatggtattcaac 7606801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 7616004 - 7615805
Alignment:
Q  27 gaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagt 126  Q
    |||||||| |||||||| |||||||| |||||||| || |||||||||||||| || || ||||| |     |||||||||||||| | ||||||  |||    
T  7616004 gaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagt 7615905  T
Q  127 ccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgt---catcatcaaatatctaactccccaacgctagagcgttggtttccaaatgg 223  Q
    |   |||||||||||||||||| ||||||||||| |||||| |||||   |||||||||||||||||  ||||||| |||||||||||||||||||||||    
T  7615904 ctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatgg 7615805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 231
Target Start/End: Complemental strand, 7629393 - 7629186
Alignment:
Q  27 gaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagt 126  Q
    |||||||| |||||||||||||||||||||||||| || ||||||||||||||  |||| ||||| |  |  |||||||||||||| | ||||||  |||    
T  7629393 gaaggcacgtcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagt 7629294  T
Q  127 ccacgtggcatttcatcaattcgtgggctgaaatgtcac---gtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttccaaatgg 223  Q
    ||  |||||||||||||||||| ||||||||||| ||||   || ||||||||||||||||||||||  | |||||    || |||||||||||||||||    
T  7629293 ccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatgg 7629194  T
Q  224 aattcaac 231  Q
     |||||||    
T  7629193 tattcaac 7629186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 39098445 - 39098372
Alignment:
Q  21 aactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctt 94  Q
    ||||| ||||||||||||||||||||| | || |||||||| || ||||| ||||| || || |||||||||||    
T  39098445 aactacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtattttcattggctt 39098372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 8910525 - 8910709
Alignment:
Q  39 aaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctt-taatttcaaccatgttgtagctgacgggcagtccacgtggcat 137  Q
    |||||||||||||| |||||||| || |||||||||||||| || |||||||| |  | |||| ||||||||||| | ||||||  |||||  |||||||    
T  8910525 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcattt-aaccatgttgtcgttgacggaaagtccgtgtggcat 8910623  T
Q  138 ttcatcaattcgtgggctgaaatgtcacgtggttgt---catcatcaaatatctaactccccaacgctagagcgttggtttccaaa 220  Q
    ||||| ||||| ||||||||||| |||||| |||||   ||| |||||||||||||  ||||||| ||||||||||||||||||||    
T  8910624 ttcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa 8910709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 8935448 - 8935641
Alignment:
Q  27 gaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctt-taatttcaaccatgttgtagctgacgggcag 125  Q
    |||||||||||||||||||||||||| |||||||| || ||| || ||||||| || |||||||| |  | |||| ||||| | |||   ||||||  ||    
T  8935448 gaaggcacatcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgctcattt-aaccacgctgtcattgacggaaag 8935546  T
Q  126 tccacgtggcatttcatcaattcgtgggctgaaatgtcac---gtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttcc 217  Q
    ||   |||||||||||||||||| ||||||||||| ||||   || ||||||||||||||||||||||  | ||||| ||||| |||||||||||    
T  8935547 tctgtgtggcatttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttcc 8935641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 8934507 - 8934669
Alignment:
Q  27 gaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggct-ttaatttcaaccatgttgtagctgacgggcag 125  Q
    |||||||||||||||||||||||||| |||||||| || ||| || ||||||| || |||||||| |  | |||| ||||| | |||   ||||||  ||    
T  8934507 gaaggcacatcaaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggttgctcattt-aaccacgctgtcattgacggaaag 8934605  T
Q  126 tccacgtggcatttcatcaattcgtgggctgaaatgtcac---gtggttgtcatcatcaaatat 186  Q
    ||   |||||||||||||||||| ||||||||||| ||||   || ||||||||||||||||||    
T  8934606 tctgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatat 8934669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 8930052 - 8930116
Alignment:
Q  27 gaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattgg 91  Q
    |||| |||||||||||||||||||||  ||||||| || ||| || ||||||| || ||||||||    
T  8930052 gaagtcacatcaaaaccattgttggcatttcaagtaactgagttaattgacggtattttcattgg 8930116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 40146736 - 40146940
Alignment:
Q  27 gaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacgggcagt 126  Q
    |||||||||||| |||||||||| ||||| ||||| |||||| ||||||||||| |||||||||| ||||  || |||||||  || | ||||||  |||    
T  40146736 gaaggcacatcacaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggagagt 40146835  T
Q  127 ccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatctaactccccaacgctagagcgttggtttccaaatggaat 226  Q
    |||| |||| |||||| ||||| |||||  |||| || |||||||||    ||||| |||| ||   |  ||||||||| ||||||||||||| ||| ||    
T  40146836 ccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaagtggtat 40146935  T
Q  227 tcaac 231  Q
    |||||    
T  40146936 tcaac 40146940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 8103254 - 8103105
Alignment:
Q  21 aactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacg 120  Q
    ||||| |||||||||||| |||||||||| || || ||||| |||||| |||||||||||||||| ||||| |||| ||| |||||||| || | ||| |    
T  8103254 aactacgaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatg 8103155  T
Q  121 ggcagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggt 170  Q
    |    ||  | ||| ||||||| ||||||||||||||||| |||||||||    
T  8103154 gaacttcggcatggtatttcattaattcgtgggctgaaatctcacgtggt 8103105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 11969686 - 11969547
Alignment:
Q  21 aactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacg 120  Q
    ||||||||||| |||||| | |||||| | || || ||||| |||||| ||||||| |||||||||||||||||||   |||| ||||| |  | |||||    
T  11969686 aactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcattggctttacaatcaatcatgtcgccgttgacg 11969587  T
Q  121 ggcagtccacgtggcatttcatcaattcgtgggctgaaat 160  Q
    |   |||||| ||||||||||||||||| |||||||||||    
T  11969586 gagtgtccacttggcatttcatcaattcatgggctgaaat 11969547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 6501285 - 6501119
Alignment:
Q  21 aactatgaaggcacatcaaaaccattgttggctgttcaagtcacagagctagttgacggcatcttcattggctttaatttcaaccatgttgtagctgacg 120  Q
    ||||| ||||||| ||||||||||||| | || || ||||| |||||| |||||| |||  |||| ||||| ||||  ||||||||||| ||  |||  |    
T  6501285 aactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagttagttggcggtgtctttattgggtttagattcaaccatgtggtcactggtg 6501186  T
Q  121 ggcagtccacgtggcatttcatcaattcgtgggctgaaatgtcacgtggttgtcatcatcaaatatc 187  Q
    |  |||||| ||||||||| |||| ||| ||||||||||| ||||||||||||  | ||||||||||    
T  6501185 gaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgttgtaatcaaatatc 6501119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 5099 - 5071
Alignment:
Q  132 tggcatttcatcaattcgtgggctgaaat 160  Q
    |||||||||||||||||||||||||||||    
T  5099 tggcatttcatcaattcgtgggctgaaat 5071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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