View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_5 (Length: 634)
Name: NF3639_low_5
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 47 - 417
Target Start/End: Complemental strand, 12434993 - 12434624
Alignment:
| Q |
47 |
caaggcaaaaagggatctcggtcaccagttcagaggaggttttcatttgcagatctaggaagttcaaggagttgcggctcctttttaaccccaggtgcgt |
146 |
Q |
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| T |
12434993 |
caaggcaaaaagggatcttggacaccagttcagaagaggttttcatttgcagatctaggaggttcgaggagttgcggctcctttttaaccccaggtgcgt |
12434894 |
T |
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| Q |
147 |
tatctttaatccggccatgtacttggcccaaaattaacacatgagcactcactttttgtaattttcaaaggcaaaaaccatctgatttgaccnnnnnnnt |
246 |
Q |
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| T |
12434893 |
tatctttaatcggaccttgtactcggtccgaaattaacacacgagcacacactttttgtgattttcaaaggcaaaaaccatctgatttgaccaaaaaagt |
12434794 |
T |
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| Q |
247 |
gattaggtgtgagatctgaattacatagctcagaagaagaaaaaattttaaattgttcaattatgactgatatgtgatgtgatattaactaccaagctga |
346 |
Q |
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| T |
12434793 |
gattaggtgtgatatctgaattacagagctcagaa-aaaaatcatctttaaattgttcaattatgactgatatgtgatgtgatattaactaccatgctgg |
12434695 |
T |
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| Q |
347 |
aaatcgagatttgttaaaaactgaataatttccagattgctaccatcaatttcaatctaaagaatatgtaa |
417 |
Q |
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| T |
12434694 |
aaatcgagatttgttaaaaaatgactaatttccggattgctaccatcaatttcaatctaaagaatatgtaa |
12434624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 443 - 616
Target Start/End: Complemental strand, 12434510 - 12434317
Alignment:
| Q |
443 |
acaaatttgggcagataggaagaataaaaacccattcactgtgccttttccttcacttaaaacaagtgacaagagacattgctagttctcaaaaatatc- |
541 |
Q |
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| T |
12434510 |
acaaatttggacagaaaggaagcataaaaaccggttcactgtgccttttccttcacttaaaacaagtgacaagagacattgctagttctcaaaaatatca |
12434411 |
T |
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| Q |
542 |
-------------------attagttcttaaattgacagagagcaaaaccctcaagcataaattctatcaagaaatcaatatgatagcaaattc |
616 |
Q |
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| T |
12434410 |
attctaatgtaaaataccaattagttcttcaattgacagagaccaaaacactcgagcataaattctatcaagaaatcaatatggtagcaaattc |
12434317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 12426686 - 12426585
Alignment:
| Q |
134 |
accccaggtgcgttatctttaatccggccatgtacttggcccaaaattaacacatgagcactcactttttgtaattttcaaaggcaaaaaccatctgatt |
233 |
Q |
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| T |
12426686 |
accccaggtccgttgactttaatcgggccatgtactcggcccaaaattaacaca--agcacacactttttgcgattttcaaagtcaaataccatctgatt |
12426589 |
T |
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| Q |
234 |
tgac |
237 |
Q |
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|||| |
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| T |
12426588 |
tgac |
12426585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 12435053 - 12435008
Alignment:
| Q |
8 |
gagcagagaacagcgcacaacacaggcaggatcctggtgcaaggca |
53 |
Q |
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| T |
12435053 |
gagcagagaacagcgcacaacacaggcaggatcctggtgcaaggca |
12435008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 577 - 616
Target Start/End: Complemental strand, 12426255 - 12426216
Alignment:
| Q |
577 |
agcataaattctatcaagaaatcaatatgatagcaaattc |
616 |
Q |
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| T |
12426255 |
agcataaattctatcaagaaatcaatacgatagcaaattc |
12426216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 323 - 396
Target Start/End: Complemental strand, 12443792 - 12443719
Alignment:
| Q |
323 |
atgtgatattaactaccaagctgaaaatcgagatttgttaaaaactgaataatttccagattgctaccatcaat |
396 |
Q |
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| T |
12443792 |
atgtgatattaactaccatgctgaaaatggagattcattaaaaaatgacacatttccaaattgctaccagcaat |
12443719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 12426520 - 12426468
Alignment:
| Q |
314 |
tgatatgtgatgtgatattaactaccaagctgaaaatcgagatttgttaaaaa |
366 |
Q |
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| T |
12426520 |
tgatatgtgatgtgatattaactaccatgctgaatatggagattcgttcaaaa |
12426468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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