View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_52 (Length: 246)
Name: NF3639_low_52
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_52 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 4981457 - 4981691
Alignment:
| Q |
12 |
agagagaagataataattagtgactaaattgatgatttattcaatatttaaattatggtgcttttaataattagtgattaacctacttttgtgcattcaa |
111 |
Q |
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| T |
4981457 |
agagagaagataataattagtgactaaattgatgatttattcaatatttaaattatggtgcttttaataattagtgattaacctagttttgtgcattcaa |
4981556 |
T |
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| Q |
112 |
agagtacgtttaattttatcttggtatattttgtttttccctaaactgcaaaagcatctaatttcataccataaacacaattatagcaaatccctctatt |
211 |
Q |
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| T |
4981557 |
agagtacgtttaattttatcttggtatattttgtttttccctaaactgcaaaagcatctaatttcataccataaacacaattatagcaaatccctctatt |
4981656 |
T |
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| Q |
212 |
tatttgcttaacataggtgcagttaaaaatttgat |
246 |
Q |
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| T |
4981657 |
tatttgcttaacataggtgcagttaaaaatttgat |
4981691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 4985035 - 4985091
Alignment:
| Q |
182 |
ataaacacaattatagcaaatccctctatttatttgcttaacataggtgcagttaaa |
238 |
Q |
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| T |
4985035 |
ataaacacaattatagccaatccatccttttatttgcttaacttaggcgcagttaaa |
4985091 |
T |
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