View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_53 (Length: 245)
Name: NF3639_low_53
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 48835742 - 48835961
Alignment:
| Q |
10 |
aggagcagagacattgtgaacaaggacattgtgatgtggcacgtagtgggaattcatcatgttccagcacaagaagattttcccataatgccaatattaa |
109 |
Q |
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| T |
48835742 |
aggaacagagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaggaagatttccccataatgccactattga |
48835841 |
T |
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| Q |
110 |
gcaccgcttttgagctgaggccaactaatttcttcgagaggaatccagttcttaagacactttcaccaagagatgttacatggcctggttgccccaagt- |
208 |
Q |
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| T |
48835842 |
gcactggatttgagttgaggccaactaatttctttgagaggaatcctgttcttaaaatactttctccaagagatgttaaatggcctggttgccccaagta |
48835941 |
T |
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| Q |
209 |
-aaaaatcaatcaactagct |
227 |
Q |
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| T |
48835942 |
aaaaaatcaatcaactagct |
48835961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 48814594 - 48814398
Alignment:
| Q |
16 |
agagacattgtgaacaaggacattgtgatgtggcacgtagtgggaattcatcatgttccagcacaagaagattttcccataatgccaatattaagcaccg |
115 |
Q |
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| T |
48814594 |
agagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaagaagatttcccaataatgccactattgagcactt |
48814495 |
T |
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| Q |
116 |
cttttgagctgaggccaactaatttcttcgagaggaatccagttcttaagacactttcaccaagagatgttacatggcctggttgccccaagtaaaa |
212 |
Q |
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| T |
48814494 |
catttgagctgagaccaacgaatttctttgagagaaatccagtccttaaaacactttctccaagagatgttgcatggcctggttgctccaagtaaaa |
48814398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 48788157 - 48787965
Alignment:
| Q |
20 |
acattgtgaacaaggacattgtgatgtggcacgtagtgggaattcatcatgttccagcacaagaagattttcccataatgccaatattaagcaccgcttt |
119 |
Q |
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| T |
48788157 |
acattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaagaagatttcccaataatgccactattgagcacttcatt |
48788058 |
T |
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| Q |
120 |
tgagctgaggccaactaatttcttcgagaggaatccagttcttaagacactttcaccaagagatgttacatggcctggttgccccaagtaaaa |
212 |
Q |
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| T |
48788057 |
tgagctcaggccaaccaatttctttgagaggaatccagtccttaaaacactttctccaaaagatgttccatggcctggttgctccaattaaaa |
48787965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 48797881 - 48797700
Alignment:
| Q |
16 |
agagacattgtgaacaaggacattgtgatgtggcacgtagtgggaattcatcatgttccagcacaagaagattttcccataatgccaatattaagcaccg |
115 |
Q |
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| T |
48797881 |
agagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacagaaagatttccccataatgccactattgagcactc |
48797782 |
T |
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| Q |
116 |
cttttgagctgaggccaactaatttcttcgagaggaatccagttcttaagacactttcaccaagagatgttacatggcctgg |
197 |
Q |
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| T |
48797781 |
gatttgagttgaggccatctaatttctttgagaggaatcatgttcttaaaatactttctccaaaagatgttccatggcctgg |
48797700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 208
Target Start/End: Complemental strand, 15824173 - 15823981
Alignment:
| Q |
16 |
agagacattgtgaacaaggacattgtgatgtggcacgtagtgggaattcatcatgttccagcacaagaagattttcccataatgccaatattaagcaccg |
115 |
Q |
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| T |
15824173 |
agagacattgtgaacaaggacatagtaatgtggcatgtagtgggaattcatcatgttccaacacaggaagacttcccaataatgccactattgagcactt |
15824074 |
T |
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| Q |
116 |
cttttgagctgaggccaactaatttcttcgagaggaatccagttcttaagacactttcaccaagagatgttacatggcctggttgccccaagt |
208 |
Q |
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| T |
15824073 |
catttgagctcaggccaaccaatttttttgagaggaatcctgtccttaaaaccctttctcctggagatgttgtatggcatggttgccccaagt |
15823981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 48914407 - 48914474
Alignment:
| Q |
136 |
aatttcttcgagaggaatccagttcttaagacactttcaccaagagatgttacatggcctggttgccc |
203 |
Q |
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| T |
48914407 |
aatttctttgagaggaatcctcttcttaaaatattttctccaagagatgttaaatggcctggttgccc |
48914474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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