View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_58 (Length: 240)
Name: NF3639_low_58
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 55653430 - 55653665
Alignment:
| Q |
1 |
attctgttcttgccttctcaaacacaccacacctaacaagagccggcacaaagaggcatattccagtagacaccacaaaaaccattgtaagtatacaaga |
100 |
Q |
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| T |
55653430 |
attctgttcttgccttctcaaacacaccacacctaacaagagccggcacaaagaggcatattccagtagacaccacaaaaaccattgtaagtatacaaga |
55653529 |
T |
|
| Q |
101 |
cacaacccttggcaataattcacgttttggttcaaataccttcttatacgcaatttgaagagccaaacacagcccatggatgaagaaaaagcacattgaa |
200 |
Q |
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| T |
55653530 |
cacaacccttggcaataattcacgttttggttcaaataccttcttatacgcaatttgaagagccaaacacaccccatggatgaagaaaaagcacattgaa |
55653629 |
T |
|
| Q |
201 |
tcccaacatggttgccaagcttcccatggatccttc |
236 |
Q |
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| T |
55653630 |
tcccaacatggttcccaagcttcccatgtatccttc |
55653665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 55661990 - 55662218
Alignment:
| Q |
1 |
attctgttcttgccttctcaaacacaccacacctaacaagagccggcacaaagaggcatattccagtagacaccacaaaaaccattgtaagtatacaaga |
100 |
Q |
| |
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||||||||||| |||| |||||| ||||||||||||||||||||||||||| |||| |||||||| ||||| || ||||||||||||||||||| |
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| T |
55661990 |
attctgttcttatcttcacaaacaagccacacctaacaagagccggcacaaagtggcaaattccagttgacactgtgaacgccattgtaagtatacaaga |
55662089 |
T |
|
| Q |
101 |
cacaacccttggcaataattcacgttttggttcaaataccttcttatacgcaatttgaagagccaaacaca-gcccatggatgaagaaaaagcacattga |
199 |
Q |
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| T |
55662090 |
cacaacccttggcaataattcacctttcggtttgaataccttcttatattcaatttgaagagccaaacacacccccatggatgaagaagaagcacattga |
55662189 |
T |
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| Q |
200 |
atcccaacatggttgccaagcttcccatg |
228 |
Q |
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| T |
55662190 |
atcccaatatggctcccaagcctcccatg |
55662218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 4476658 - 4476862
Alignment:
| Q |
24 |
acaccacacctaacaagagccggcacaaagaggcatattccagtagacaccacaaaaaccattgtaagtatacaagacacaacccttggcaataattcac |
123 |
Q |
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|||||| ||||||||||||| || ||||||| | ||| |||||||||| || || ||||||| || ||||||||||||||||||| ||||| | |
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| T |
4476658 |
acaccagacctaacaagagctggaacaaagaagtataacgcagtagacacaacgaaggccattgtgagggtacaagacacaacccttggtaataactggt |
4476757 |
T |
|
| Q |
124 |
gttttggttcaaataccttcttatacgcaatttgaagagccaaacacagcccatggatgaagaaaaagcacattgaatcccaacatggttgccaagcttc |
223 |
Q |
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||||||||| || | |||||| || ||||||| |||||||| ||||| |||||||||||| || || |||||||||||||||||||||| ||||||||| |
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| T |
4476758 |
gttttggtttgaagatcttcttgtatgcaatttcaagagccacacacaccccatggatgaaaaagaaacacattgaatcccaacatggttcccaagcttc |
4476857 |
T |
|
| Q |
224 |
ccatg |
228 |
Q |
| |
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||||| |
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|
| T |
4476858 |
ccatg |
4476862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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