View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_6 (Length: 486)
Name: NF3639_low_6
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 10723933 - 10724402
Alignment:
| Q |
19 |
accccgaacatatgcaactactgaannnnnnnaattgttgcattttttatttatatatttgttctaaaattattgaaaactcaataaatacaaactatga |
118 |
Q |
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| T |
10723933 |
accccgaacatatgcaactactgaatttttttaattgttgcattttttatttatatgtttgttctaaaattattgaaaactcaataaatacaaactatga |
10724032 |
T |
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| Q |
119 |
aagtgaaacaaatcagatggctgagatcatcctgcagggaatcctacatatataccaacaaaatagttgtattactttcattttgtgccttctgtagtat |
218 |
Q |
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| T |
10724033 |
aagtgaaacaaatcagatggctgagatcatcctgcagggaatcctacatatataccaacaaaatagttgtattactttcattttgtgccttctgtagtat |
10724132 |
T |
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| Q |
219 |
agtaattcttctattgccttgacaagggattgagaaagattatctacatttgggaaaatgttcaaactttcaaatgaaataagcacaatttggtcctttt |
318 |
Q |
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| T |
10724133 |
agtaattcttctattgccttgacaagggattgagaaagattatctacatttgggaaaatgttcaaactttcaaatgaaataagcacaatttggtcctttt |
10724232 |
T |
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| Q |
319 |
tcttgtacaatttgccaccatcagttttatcaactaatg------aagttgcaaataatgaagttgcaaaatcggcaaaaccaacattatcggg--gtta |
410 |
Q |
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| T |
10724233 |
tcttgtacaatttgccaccatcagttttatcaactaaagatggaaaggatgcaaataatgaagttgcaaaatcggcaaaaccaacattatcggggtgtta |
10724332 |
T |
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| Q |
411 |
tcattcactcaaaccttgtgatgatacagtcattaaaaacatcaataaaatgcacgccgcttcatctcac |
480 |
Q |
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| T |
10724333 |
tcattcactcaaaccttgtgatgatacagtcattaaaaacatcaataaaatgcacgccgctccatttcac |
10724402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 11418163 - 11418226
Alignment:
| Q |
248 |
ttgagaaagattatctacatttgggaaaatgttcaaactttcaaat-gaaataagcacaatttg |
310 |
Q |
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|||| ||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||||| |
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| T |
11418163 |
ttgacaaagattatttacatttagaaaaatgttcaaactttcaaatagaaataagcacaatttg |
11418226 |
T |
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