View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3639_low_63 (Length: 206)
Name: NF3639_low_63
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_63 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 48 - 188
Target Start/End: Original strand, 4981718 - 4981858
Alignment:
| Q |
48 |
attcctatgtttaaaaatattcgttttcactatttttatacattacaactactttctatcttgatttggatttctgttaccttaaatatctctctcaatg |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4981718 |
attcctatgtttaaaaatattcgttttcactatttttatacattacaactactttctatcttgatttggatttctgttaccttaaatatctctctcaatg |
4981817 |
T |
|
| Q |
148 |
tattaaccataagagtttatcattcttcaccaagaggagtg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4981818 |
tattaaccataagagtttatcattcttcaccaagaggagtg |
4981858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 4981668 - 4981702
Alignment:
| Q |
17 |
cataggtgcagttaaaaatttgatcacacaaattc |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4981668 |
cataggtgcagttaaaaatttgatcacacaaattc |
4981702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 4985159 - 4985231
Alignment:
| Q |
71 |
ttttcactatttttatacattacaactactttctatcttgatttggatttctgttaccttaaatatctctctc |
143 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| ||||| ||| | | || |||||||||||||| |||||| |
|
|
| T |
4985159 |
ttttcactatttttatacattacatctattttgggtcttgttttagttatcagttaccttaaatatatctctc |
4985231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University