View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3639_low_7 (Length: 477)
Name: NF3639_low_7
Description: NF3639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3639_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 40249442 - 40249683
Alignment:
| Q |
20 |
actcatattcaatccacaacacataattacaatcagacttgaaaaactgaatactaaaaagtggttattcatcctataaaaggcgaaaaatgattgaagg |
119 |
Q |
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| T |
40249442 |
actcatattcaatccacagcacataattacaatcagacttgaaaaactgaatactaaaaagtggttattcatcctataaaaggcgaaaaatgattcaagg |
40249541 |
T |
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| Q |
120 |
ccaaaaggagaaaactcatatatgtaaccacttttgatcaaagaatgatctcatatgtcagagattatgtggagatatttgtagaaatgaacaaaaatat |
219 |
Q |
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| T |
40249542 |
ccaaaaggagaaaactcatttatgtaaccacttttgatcaaagaatgatctcatatgtcagagattatgtggagatatttgtagaaatgaacaaaaatat |
40249641 |
T |
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| Q |
220 |
atcaaatg-nnnnnnntggggtatgctttaatatactaatag |
260 |
Q |
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| T |
40249642 |
accaaatgaaaaaaaatggggtatgctttaatatactaatag |
40249683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 328 - 461
Target Start/End: Original strand, 40250436 - 40250569
Alignment:
| Q |
328 |
tttttatccaccattgttcttccttttatcgattttgaagaaacacacaaacccacctactactccatttttatttcattattcttcactacaaaatcaa |
427 |
Q |
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| T |
40250436 |
tttttatccaccattgttcttccttttattgattttgaagaaacacacaaacccacctactactccatttttatttcattattcttcactacaaaatcaa |
40250535 |
T |
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| Q |
428 |
actcaccagccaccactgttcttcccttttccct |
461 |
Q |
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| T |
40250536 |
actcaccagccatcaccgttcttcccttttccct |
40250569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 40249791 - 40249727
Alignment:
| Q |
270 |
cctattataatcatattctttcttcacgtcaaatgtcaaaatgtgaatgagggaattctttttat |
334 |
Q |
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| T |
40249791 |
cctattataatcatattctttcttcacgtcaaatgtcaaaatgtgaatgagggaattctttttat |
40249727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 454
Target Start/End: Original strand, 31624655 - 31624719
Alignment:
| Q |
390 |
ctccatttttatttcattattcttcactacaaaatcaaactcaccagccaccactgttcttccct |
454 |
Q |
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| T |
31624655 |
ctccattttcatttcatcactcttcactacaaaatcaacctcattgtccaccactgttcttccct |
31624719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 454
Target Start/End: Complemental strand, 5687996 - 5687932
Alignment:
| Q |
390 |
ctccatttttatttcattattcttcactacaaaatcaaactcaccagccaccactgttcttccct |
454 |
Q |
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| T |
5687996 |
ctccattttcatttcatcactcttcactataaaatcaacctcatcgtccaccactgttcttccct |
5687932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 449
Target Start/End: Original strand, 46674233 - 46674291
Alignment:
| Q |
391 |
tccatttttatttcattattcttcactacaaaatcaaactcaccagccaccactgttct |
449 |
Q |
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| T |
46674233 |
tccattttcatttcatcactcttcactacaaaatcaacctcatcgtccaccactgttct |
46674291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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