View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3640_high_11 (Length: 469)
Name: NF3640_high_11
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 35949557 - 35949317
Alignment:
| Q |
3 |
aacttctttctcatcttatatatcataggttattttcatacaattattgaaatacgtatatcataagattagctaaaacgagtaaataatatttttcaaa |
102 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35949557 |
aacttctttctcaacatatatatcataggttattttcatacaattattgaaatacttatatcatcagattagcttaaacgagtaaataatatttttcaaa |
35949458 |
T |
|
| Q |
103 |
cacaaataatgtgttgtacaaacttctctcaaacggaaagcaacatattagctat--acatcattacaannnnnnnnncttcatatagtgatcgaaaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |
|
|
| T |
35949457 |
cacaaataatgtgttgtacaaact--tctcaaaaggaaagcaacatattagctatacacatcattacaa-ttttttttcttcatatagtgatagaaaaaa |
35949361 |
T |
|
| Q |
201 |
tctgtaggtaaaggtaaacaaaccgtgggtgtatttgataaaac |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
35949360 |
tctgtaggtaaaggtaaacaaaccgtgggtgtatgtgataaaac |
35949317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 289 - 451
Target Start/End: Complemental strand, 35949273 - 35949111
Alignment:
| Q |
289 |
aataataaaagtttccaattatttatgtatataccacccgctgtatttgttgtccttcggattcttttttagcatgaaaagctttagaagtagacgtttt |
388 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35949273 |
aataataaaagtttccaattatctatgtatataccacccactgtatttgttgtccttcggattcttttttagcatgaaaagctttagaagtggacgtttt |
35949174 |
T |
|
| Q |
389 |
gcttacgaattgtaaagctaaacatgtgtttctcttagctagagcttcatcaataaatttaat |
451 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35949173 |
gcttacgaattgtaaagctaaacatgtgtttctcttagctagagcttcctcaataaatttaat |
35949111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 35964092 - 35964043
Alignment:
| Q |
341 |
tccttcggattcttttttagcatgaaaagctttagaagtagacgttttgc |
390 |
Q |
| |
|
|||||| |||||||||||||| || ||||||||||||||||||| ||||| |
|
|
| T |
35964092 |
tccttctgattcttttttagcttggaaagctttagaagtagacgctttgc |
35964043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University