View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_18 (Length: 395)
Name: NF3640_high_18
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 46449602 - 46449213
Alignment:
| Q |
1 |
tgattattgcgcatattgaaaggaacatttagttcatcagacaaaagctttccatcacgatacaaggaaaatgcttgggcaaatttcccgacaggaatgt |
100 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46449602 |
tgattattgcgcctattgaaaggaacatttagttcctcagacaaaagctttccctcacgatacaaggaaaatgcttgggcaaatttcccgacaggaatgt |
46449503 |
T |
|
| Q |
101 |
accggtaagggcggtcgagaacggaccagtactgctcttgatccttcttagacgtgacctgttgataagatttttaagtctgaacagccacttaagttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46449502 |
accggtaagggcggtcgagaacggaccagtactgctcttgatccttcttagacgtgacctgttgataagatttttaagtctgaacagccacttaagttaa |
46449403 |
T |
|
| Q |
201 |
aatgtattagaaatacttattcaaatatcactgctactcacttcttgtaagaagtctgctacattttttctctcaggacaactgaatcccataagtttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46449402 |
aatgtattagaaatacttattcaaatatcactgctactcacttcttgtaagaagtctgctacattttttctctcaggacaactgaatcccataagtttga |
46449303 |
T |
|
| Q |
301 |
aaaattcaatagcagcctcacgcggcccctgatatacaatctgaccctcggacaacagaatgacatcatcaaacaattcataggtctctg |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46449302 |
aaaattcaatagcagcctcacgcggcccctgatatacaatctgaccctcggacaacagaatgacatcatcaaacaattcataggtctctg |
46449213 |
T |
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