View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3640_high_2 (Length: 948)
Name: NF3640_high_2
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 337 - 934
Target Start/End: Original strand, 24501221 - 24501810
Alignment:
| Q |
337 |
ttcaataaatcttttttaccgttcgtattttcnnnnnnncacctcaaa---gaggtgaaaacgattaaccgtgaactctaatttcttttactcttttctc |
433 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||| |||||||| ||| ||| ||||||||||||||||||||| |||||| | |
|
|
| T |
24501221 |
ttcaataaatctttcttacggttcgtattttctttttttcacctcaaataggaggtgaa--cgactaatcgtgaactctaatttcttttattctttttta |
24501318 |
T |
|
| Q |
434 |
aaattgaaaattttaataaggtgactttttgtatgcttttctcacgttttaatgtatctccaccggccatccatgattttgagaaactataaatactagc |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24501319 |
aaattgaaaattttaataaggtgactttttgtatgcttttctcagattttaatgtatctccaccggccacccatgattttgagaaactataaatactagc |
24501418 |
T |
|
| Q |
534 |
ttttggtcaatcactaaattttagaaagtgaaattttttgttgttgtttgaggatagagtgatgagcatcaagaacactcgaacatgtaaagacgacatg |
633 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24501419 |
ttttggtcaatcactaaattttagaaagtgaaattttttgttgttgtttgacgatagagtgataagcatcaagaacactcgaacacgtaaagacgacatg |
24501518 |
T |
|
| Q |
634 |
tcatatttgagtttggataattataaaaatggtcggtcaaacaactttttattttgtcagttgaactagatttattttnnnnnnnnntacttggatttat |
733 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
24501519 |
tcatatttgagcttggataattataaaaatggtcagtccaacaactttttattttgtcagttgaactagattta-tttaaaaaaaaatacttggatttat |
24501617 |
T |
|
| Q |
734 |
tcctttgttagtattctataataatttaacatggatttaaattgataaatcttttnnnnnnncatttaaattgataaataatgagagagaaataatgttt |
833 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
24501618 |
tcctttgttagtattctataataatataacatggatttaaattgataaatcttt--------catttaaattgaaacataatgagagagaaataatgttt |
24501709 |
T |
|
| Q |
834 |
gttttttaggaattatattgaaggaaattaaagtcagattaaggtaattttcttttaaggaaaattaaggtaatttttgtttactaaatataggagacat |
933 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24501710 |
gttttttaggaattatattaaaggaaattaaagtcaaattaaggtaattttcttttaaggaaaattaaggtaatttttgtttactaaatataggagacat |
24501809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 24500983 - 24501024
Alignment:
| Q |
80 |
catgtgaaacgaattaactgtgaactctactttcttttactg |
121 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24500983 |
catgtgaaacgaattaaccgtgaactctactttcttttactg |
24501024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University