View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_20 (Length: 385)
Name: NF3640_high_20
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 2131797 - 2131421
Alignment:
| Q |
1 |
aggatcctcacgggattccaaataatcttatgccatttattcagcaagtagcggttggcagacgtcctgcactgacagtttttggaaatgattataaaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131797 |
aggatcctcacgggattccaaataatcttatgccatttattcagcaagtagcggttggcagacgtcctgcactgacagtttttggaaatgattataaaac |
2131698 |
T |
|
| Q |
101 |
agttgatggtactggggtatgttatcattcacttcaacttttccgttttgattatttcatgtgcatcagtgctcttcgtcatcccgtttgtaccctgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131697 |
agttgatggtactggggtatgttatcattcacttcaacttttccgttttgattatttcatgtgcatcagtgctcttcgtcatcccgtttgtaccctgtta |
2131598 |
T |
|
| Q |
201 |
gaaattttgcttgtacaaactgtctgtcctcattggatggttctgttgggtgcatgcatttatttaccatttttaaggtatatttttgatttcttcacta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2131597 |
gaaattttgcttgtacaaactgtctgtcctcattggatggttctgttggttgcatgcatttatttaccatttttaaggtatattttttatttcttcacta |
2131498 |
T |
|
| Q |
301 |
tggatcttactggatagttcttaccttattctcaggttcgggattacattcatgttgttgatttagatgatgtccat |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
2131497 |
tggatcttactggatagttcttaccttattctcaggttcgggattacattcatgttgttgatttagctgatggccat |
2131421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 2127323 - 2127212
Alignment:
| Q |
16 |
ttccaaataatcttatgccatttattcagcaagtagcggttggcagacgtcctgcactgacagtttttggaaatgattataaaacagttgatggtactgg |
115 |
Q |
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||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
2127323 |
ttccaaacaatctcatgccattcattcagcaagtagcggttggcagacggcctgcactgacaatttttggaaatgattataatacagttgatggtactgg |
2127224 |
T |
|
| Q |
116 |
ggtatgttatca |
127 |
Q |
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|||||||||||| |
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| T |
2127223 |
ggtatgttatca |
2127212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 201 - 366
Target Start/End: Complemental strand, 2127035 - 2126869
Alignment:
| Q |
201 |
gaaattttgcttgtacaaactgtctgtcctcattggatggttctgtt-gggtgcatgcatttatttaccatttttaaggtatatttttgatttcttcact |
299 |
Q |
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||||||||||||| ||| ||| ||||||| || |||| |||||||| |||||| || |||||||| ||||| | ||| | || ||||||||||| || |
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| T |
2127035 |
gaaattttgcttgaacatactacctgtccttatcggattgttctgttagggtgcctgtatttattttccattctaaagatctacctttgatttctttacc |
2126936 |
T |
|
| Q |
300 |
atggatcttactggatagttcttaccttattctcaggttcgggattacattcatgttgttgatttag |
366 |
Q |
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|| ||||||| ||||| |||| |||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
2126935 |
attgatcttattggatgattctcaccttattcttaggttcgggatttcattcatgttgttgatttag |
2126869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 42030498 - 42030620
Alignment:
| Q |
1 |
aggatcctcacgggattccaaataatcttatgccatttattcagcaagtagcggttggcagacgtcctgcactgacagtttttggaaatgattataaaac |
100 |
Q |
| |
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||||||||| ||| ||||| || || || ||||| ||| |||||||||| || ||||||||||| ||||| ||||||||||||||| ||||||| || |
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| T |
42030498 |
aggatcctcgcggaattcccaacaacctcatgccttttgttcagcaagttgcagttggcagacgctctgcattgacagtttttggaacagattatagcac |
42030597 |
T |
|
| Q |
101 |
agttgatggtactggggtatgtt |
123 |
Q |
| |
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| |||||| ||||| ||||||| |
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| T |
42030598 |
aagtgatggaactggagtatgtt |
42030620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 41807785 - 41807742
Alignment:
| Q |
329 |
ttctcaggttcgggattacattcatgttgttgatttagatgatg |
372 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||| ||||| |
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|
| T |
41807785 |
ttctcaggtccgtgattacattcatgttgttgatttagctgatg |
41807742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 329 - 372
Target Start/End: Original strand, 42030860 - 42030903
Alignment:
| Q |
329 |
ttctcaggttcgggattacattcatgttgttgatttagatgatg |
372 |
Q |
| |
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||||||||| || ||||||||||||||||||||||||| ||||| |
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| T |
42030860 |
ttctcaggtccgtgattacattcatgttgttgatttagctgatg |
42030903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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