View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_22 (Length: 380)
Name: NF3640_high_22
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 8344422 - 8344573
Alignment:
| Q |
11 |
tcatcatttgcatagctatggtggtggtattggcattaatagtggtggaggatacggcaatggtgcagttggtggttcaggtagtggtggagttggtgta |
110 |
Q |
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| T |
8344422 |
tcatcatttgcatagctatggtggtggtattggcattaatagtggtggaggatacggcaatggtgcagttggtggttcaggtagtggtggagttggtgta |
8344521 |
T |
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| Q |
111 |
ggacctggttctgggggtgtagttggaggtgaaaataaccccggaaatagtc |
162 |
Q |
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| T |
8344522 |
ggacctggttctgggggtgtagttggaggtggatataaccccggaaatagtc |
8344573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 8344650 - 8344712
Alignment:
| Q |
239 |
tagttttggagggtctggtagtggaggaataggtggtggttatggtgatggaattggaggatc |
301 |
Q |
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| T |
8344650 |
tagttttggagggtctggtggtggaggaataggtggtggttatggtgatggaattggaggatc |
8344712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 300
Target Start/End: Original strand, 8344747 - 8344795
Alignment:
| Q |
252 |
tctggtagtggaggaataggtggtggttatggtgatggaattggaggat |
300 |
Q |
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| T |
8344747 |
tctggtggtggagcaataggtggtggttatggtggtggaaatggaggat |
8344795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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