View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_24 (Length: 377)
Name: NF3640_high_24
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 52036411 - 52036762
Alignment:
| Q |
10 |
catcatcaaaattttgagcatagcttaaaggatcatacctaaaaccaccaacggttctcctcttccacggcagcttcaatttgagacgcccaaagcatga |
109 |
Q |
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| T |
52036411 |
catcatcaaaattttgagcatagcttaaaggatcatacctaaaaccaccaacggttctcctcttccacggcagcttcaatttgagacgcccaaagcatga |
52036510 |
T |
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| Q |
110 |
aagcaaccctcctccacctgttttgcttcttctaggagatgatggacttgtttccattgctagctaatttttgagatagatagcttcattgaatgaaaac |
209 |
Q |
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| T |
52036511 |
aagcaaccctcctccacctgttttgcttcttctagtagatgatggacttgtttccattgctagctaatttttgagatagatagcttcattgaatgaaaac |
52036610 |
T |
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| Q |
210 |
ttagtgttagctctcgtggggtcnnnnnnnattcacaacttctattttaatttggtatggattttaattgtgtggtagagaataatataacttgagaaga |
309 |
Q |
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| T |
52036611 |
ttagtgttagctctcgtggggtctttttttattcacaacttctattttaatttggtatggattttaagtgtgtggtagagaataatataacttgagaaga |
52036710 |
T |
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| Q |
310 |
aacaaaaccca-nnnnnnnggtttacagaatatataattgtcctcttaagat |
360 |
Q |
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| T |
52036711 |
aacaaaacccattttttttggtttacagaatatataattgtcctcttaagat |
52036762 |
T |
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