View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3640_high_26 (Length: 337)

Name: NF3640_high_26
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3640_high_26
NF3640_high_26
[»] chr7 (5 HSPs)
chr7 (30-124)||(45468941-45469035)
chr7 (201-280)||(45468781-45468860)
chr7 (201-280)||(39220223-39220304)
chr7 (33-124)||(39220059-39220155)
chr7 (282-313)||(45468736-45468767)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 45469035 - 45468941
Alignment:
Q  30 cataggatttcgtaaatactgtgctcaccgactaaatcatcatcagtatttaataattgactataggtatcctaacatcccataaagatttgctt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45469035 cataggatttcgtaaatactgtgctcaccgactaaatcatcatcagtatttaataattgactataggtatcctaacatcccataaagatttgctt 45468941  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 45468860 - 45468781
Alignment:
Q  201 atagaagaggaaacacatcacattactcttgttcaagtgctatcacaacttcttaatcttattacctgtaagcagtttaa 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45468860 atagaagaggaaacacatcacattactcttgttcaagtgctatcacaacttcttaatcttattacctgtaagcagtttaa 45468781  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 39220223 - 39220304
Alignment:
Q  201 atagaagaggaaacacatcacattactcttgttcaagtgctatcacaacttcttaatcttatt--acctgtaagcagtttaa 280  Q
    |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||  ||| |||||||||||||    
T  39220223 atagaagaggaaacacatcacatttctcttgttcaagtgttattacaacttcttaatcttattaaaccagtaagcagtttaa 39220304  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 124
Target Start/End: Original strand, 39220059 - 39220155
Alignment:
Q  33 aggatttcgtaaatactgtgctca---ccgactaaatcatcatcagtatttaataat--tgactataggtatcctaacatcccataaagatttgctt 124  Q
    ||||||| |||||||||||||| |   |||||||||||||||||| |||||| ||||  ||||||||||||||| ||||||||||||||||||||||    
T  39220059 aggatttggtaaatactgtgctgaataccgactaaatcatcatcaatatttagtaatattgactataggtatccgaacatcccataaagatttgctt 39220155  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 282 - 313
Target Start/End: Complemental strand, 45468767 - 45468736
Alignment:
Q  282 atacatatacacttccacggtacagaggaaaa 313  Q
    ||||||||||||||||||||||||||||||||    
T  45468767 atacatatacacttccacggtacagaggaaaa 45468736  T

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