View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_27 (Length: 333)
Name: NF3640_high_27
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 14304482 - 14304183
Alignment:
| Q |
19 |
gaagtacttagtgttcatcaattcaacttccattctcagaaactaggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggtttaaggt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304482 |
gaagtacttagtgttcatcaattcaacttccattctcagaaactaggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggtttaaggt |
14304383 |
T |
|
| Q |
119 |
tgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgaagcagtttcatcc |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14304382 |
tgtcaagttcttcaagacaggctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagacttgatgaagcagtttcatcc |
14304283 |
T |
|
| Q |
219 |
tatttggatgatgccattacaagttgccgctgcattggctcttatgtatagctatgttggtgtatctgtcgttgcagcaattcttggtactgccattgtc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304282 |
tatttggatgatgccattacaagttgccgctgcattggctcttatgtatagctatgttggtgtatctgtcgttgcagcaattcttggtactgccattgtc |
14304183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 14282724 - 14282425
Alignment:
| Q |
19 |
gaagtacttagtgttcatcaattcaacttccattctcagaaactaggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggtttaaggt |
118 |
Q |
| |
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|||||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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| T |
14282724 |
gaagtacttagtagtcatcagttcaacttccactctcagaaacttggtatgcttgttcgttcgagcataatcacttcagtttacaaaaagggcttaaggt |
14282625 |
T |
|
| Q |
119 |
tgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgaagcagtttcatcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14282624 |
tgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgatgcagtttcatcc |
14282525 |
T |
|
| Q |
219 |
tatttggatgatgccattacaagttgccgctgcattggctcttatgtatagctatgttggtgtatctgtcgttgcagcaattcttggtactgccattgtc |
318 |
Q |
| |
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||| ||| |||||||||| |||||| ||||||||||| |||| |||||||||||||||| || |||||||| ||| |||||||||||| |||||||||| |
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| T |
14282524 |
tatatggttgatgccattgcaagtttccgctgcattgtttcttttgtatagctatgttggcgtgtctgtcgtggcatcaattcttggtattgccattgtc |
14282425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 14320873 - 14320595
Alignment:
| Q |
19 |
gaagtacttagtgttcatcaattcaacttccattctcagaaactaggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggtttaaggt |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
14320873 |
gaagtacttagtgttcatcaatttaacttccactctcaaaaactcggtatgcttattcgttcgagcataatcacttcagtttacaaaaagggtttaaggt |
14320774 |
T |
|
| Q |
119 |
tgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgaagcagtttcatcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
14320773 |
tgtcaagttcttcaagacaagctcatggaactggccaaattgttaatcacatggctgttgatgctcaacagctctcagatttgatgatgcagtttcatcc |
14320674 |
T |
|
| Q |
219 |
tatttggatgatgccattacaagttgccgctgcattggctcttatgtatagctatgttggtgtatctgtcgttgcagca |
297 |
Q |
| |
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||| ||| |||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||| || |||||||| |
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|
| T |
14320673 |
tatatggttgatgccattgcaagttggtgctgcattggctcttatgtacagctatgttggtctatcagtacttgcagca |
14320595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 25885555 - 25885277
Alignment:
| Q |
19 |
gaagtacttagtgttcatcaattcaacttccattctcagaaactaggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggtttaaggt |
118 |
Q |
| |
|
||||| || ||||||||||||| ||||||||| || |||||| | ||||||||| |||| ||||||||||| ||||||||||||||||||||| | |||| |
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|
| T |
25885555 |
gaagtgctgagtgttcatcaatacaacttccactcgcagaaaatcggtatgcttattcgttcgagcataattacttcggtttacaaaaagggtctgaggt |
25885456 |
T |
|
| Q |
119 |
tgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgaagcagtttcatcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| || |
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| T |
25885455 |
tgtcaagttcttcaagacaagctcatggaacaggacagatagtgaatcacatggctgttgatgctcaacaactctcagatatgatgatgcagcttcaccc |
25885356 |
T |
|
| Q |
219 |
tatttggatgatgccattacaagttgccgctgcattggctcttatgtatagctatgttggtgtatctgtcgttgcagca |
297 |
Q |
| |
|
||| ||| |||||||||| ||||| || | ||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
25885355 |
tatatggttgatgccattgcaagtagctgtggcattggctcttatgtatagctatgttggtgtatcagtacttgcagca |
25885277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 44349399 - 44349177
Alignment:
| Q |
19 |
gaagtacttagtgttcatcaattcaacttccattctcagaaactaggtatgcttgttcgctcgagcataatcacttcggtttacaaaaagggtttaaggt |
118 |
Q |
| |
|
|||||||| ||||| ||||||| ||||||||| || |||||| | ||||||||| |||| |||||||||||||||| |||||||||||||||| |||| | |
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| T |
44349399 |
gaagtactgagtgt-catcaatacaacttccactcgcagaaaatcggtatgcttattcgttcgagcataatcactttggtttacaaaaagggtctaagat |
44349301 |
T |
|
| Q |
119 |
tgtcaagttcttcaagacaagctcatggaactggacagattgtgaatcacatggctgttgatgctcaacaactctcagatttgatgaagcagtttcatcc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||| |||| |||| || |
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|
| T |
44349300 |
tgtcaagttcttcaagacaagctcatggaacaggacagatagtgaatcacatgtctgttgatgctcaacaactctcagatatgatgatgcagcttcaccc |
44349201 |
T |
|
| Q |
219 |
tatttggatgatgccattacaagt |
242 |
Q |
| |
|
||| ||| |||||||||| ||||| |
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|
| T |
44349200 |
tatatggttgatgccattgcaagt |
44349177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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