View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3640_high_29 (Length: 321)
Name: NF3640_high_29
Description: NF3640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3640_high_29 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 22 - 273
Target Start/End: Original strand, 15380210 - 15380458
Alignment:
| Q |
22 |
ctataaaagaaggaaattaaataactgtttgtgggtagatgatgacaaaggatcaaactcccaatgaaaagaacnnnnnnnnnntgaacagtagtactaa |
121 |
Q |
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| T |
15380210 |
ctataaaagaaggaaattaaataactgtttgtgggtagatgatgacaaaggatcaaactcccaatgaaaagaacaaaaaaaaa-tgaacagtagtactaa |
15380308 |
T |
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| Q |
122 |
taaaggaagnnnnnnnncttaaaataaataaggtggtggtccaagtttgtccagaaacctcaaaattttattatagaaggtttttgagtttcataattga |
221 |
Q |
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| T |
15380309 |
taaaggaagaaaaaaa-cttaaaataaataaggtggtggtccaagtttgtccagaaacctcaaaattttattatagaaggtttttgagtttcataattga |
15380407 |
T |
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| Q |
222 |
cttaagagtcatggggcacattactacaatattgcatgagagttgtgagctt |
273 |
Q |
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| T |
15380408 |
ctt-agagtcatggggcacattactacaatattgcataagagttgtgagctt |
15380458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 26435801 - 26435751
Alignment:
| Q |
23 |
tataaaagaaggaaattaaataactgtttgtgggtagatgatgacaaagga |
73 |
Q |
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| T |
26435801 |
tataaaaagaggaaattaaatagctgtttctgggtagatgttgacaaagga |
26435751 |
T |
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